Summary of Study ST001049
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000703. The data can be accessed directly via it's Project DOI: 10.21228/M8T10P This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST001049 |
| Study Title | P4HA1 knockdown in the breast cell line MDA231 (part I) |
| Study Type | isotope tracer |
| Study Summary | Determine the effect of knocking down P4HA1 in the MDA231 cell line (including alterations to metabolic pathways). Control versus knockdown |
| Institute | University of Kentucky |
| Department | Markey Cancer Center |
| Last Name | Xiong |
| First Name | Gaofeng |
| Address | BBSRC361, 741 South Limestone, Lexington, KY 40536, USA |
| gaofeng.xiong@uky.edu | |
| Phone | 000-000-0000 |
| Submit Date | 2018-09-12 |
| Study Comments | For additional comments about the study, like listing a publication. |
| Raw Data Available | Yes |
| Raw Data File Type(s) | raw(Thermo) |
| Analysis Type Detail | GC-MS |
| Release Date | 2019-03-06 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000703 |
| Project DOI: | doi: 10.21228/M8T10P |
| Project Title: | P4HA1 knockdown in the breast cell line MDA231 |
| Project Summary: | Determine the effect of knocking down P4HA1 in the MDA231 cell line (including alterations to metabolic pathways). |
| Institute: | University of Kentucky |
| Department: | Markey Cancer Center |
| Last Name: | Xu |
| First Name: | Ren |
| Address: | BBSRC361, 741 South Limestone, Lexington, KY 40536, USA |
| Email: | ren.xu2010@uky.edu |
| Phone: | 000-000-0000 |
Subject:
| Subject ID: | SU001198 |
| Subject Type: | Animal |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Mammals |
Factors:
Subject type: Animal; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | protocol.id |
|---|---|---|
| SA078261 | 1_MDA231_12CGlc_shCTL_rep1-cells-polar_GCMS_A | 12CGlc_shCTL |
| SA078262 | 4_MDA231_12CGlc_shP4HA1_rep1-cells-polar_GCMS_A | 12CGlc_shP4HA1 |
| SA078263 | 3_MDA231_13CGlc_shCTL_rep2-cells-polar_GCMS_A | 13CGlc_shCTL |
| SA078264 | 2_MDA231_13CGlc_shCTL_rep1-cells-polar_GCMS_A | 13CGlc_shCTL |
| SA078265 | 5_MDA231_13CGlc_shP4HA1_rep1-cells-polar_GCMS_A | 13CGlc_shP4HA1 |
| SA078266 | 6_MDA231_13CGlc_shP4HA1_rep2-cells-polar_GCMS_A | 13CGlc_shP4HA1 |
| Showing results 1 to 6 of 6 |
Collection:
| Collection ID: | CO001192 |
| Collection Summary: | Collection and quench of cells in culture |
| Collection Protocol ID: | cell_quench_collection |
| Collection Protocol Filename: | 3A_Cells_Quench_Cell_Fan_20170412.pdf |
| Sample Type: | cultured cells |
Treatment:
| Treatment ID: | TR001213 |
| Treatment Summary: | Cells grown in unlabeled glucose and infected with empty vector. Cells grown in unlabeled glucose and infected with shP4HA1 lentivirus. Cells grown in labeled glucose and infected with empty vector. Cells grown in labeled glucose and infected with shP4HA1 lentivirus. |
| Treatment Protocol ID: | 12CGlc_shCTL 12CGlc_shP4HA1 13CGlc_shCTL 13CGlc_shP4HA1 |
Sample Preparation:
| Sampleprep ID: | SP001206 |
| Sampleprep Summary: | Polar extraction from cells. Protein extraction and quantification. |
| Sampleprep Protocol ID: | polar_extraction protein_extraction |
| Sampleprep Protocol Filename: | 4B_Extract_Polar_Lipid_Prot_Fan_070417.pdf 4D_17Jun4_Fan_Prot_Quant.pdf |
Combined analysis:
| Analysis ID | AN001864 |
|---|---|
| Analysis type | MS |
| Chromatography type | GC |
| Chromatography system | GC-EI-MS, Thermo ITQ |
| Column | SGE 0.15 mm i.d. x 50 m fused silica open-tubular column, coated with 0.25 μm BPX-5 (5% phenylmethyl- phenylsiloxane) |
| MS Type | EI |
| MS instrument type | GC-ITQ |
| MS instrument name | Thermo ITQ |
| Ion Mode | POSITIVE |
| Units | normalized peak area |
Chromatography:
| Chromatography ID: | CH001349 |
| Chromatography Summary: | Targeted GC |
| Instrument Name: | GC-EI-MS, Thermo ITQ |
| Column Name: | SGE 0.15 mm i.d. x 50 m fused silica open-tubular column, coated with 0.25 μm BPX-5 (5% phenylmethyl- phenylsiloxane) |
| Chromatography Type: | GC |
MS:
| MS ID: | MS001724 |
| Analysis ID: | AN001864 |
| Instrument Name: | Thermo ITQ |
| Instrument Type: | GC-ITQ |
| MS Type: | EI |
| MS Comments: | GCMS Analytical Experiment with detection of compounds by comparison to standards. Derivitization is done with MTBSTFA (N-methyl-N-[tert-butyldimethylsilyl]trifluoroacetamide). |
| Ion Mode: | POSITIVE |
