Summary of Study ST001138

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000703. The data can be accessed directly via it's Project DOI: 10.21228/M8T10P This work is supported by NIH grant, U2C- DK119886.

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Study IDST001138
Study TitleP4HA1 knockdown in the breast cell line MDA231 Gln metabolism (part V)
Study Typeisotope tracer
Study SummaryDetermine the effect on glutamine metabolism of knocking down P4HA1 in the MDA231 cell line.
Institute
University of Kentucky
DepartmentMarkey Cancer Center
Last NameXiong
First NameGaofeng
AddressBBSRC361, 741 South Limestone, Lexington, KY 40536, USA
Emailgaofeng.xiong@uky.edu
Phone000-000-0000
Submit Date2019-02-15
Study CommentsFor additional comments about the study, like listing a publication.
Raw Data AvailableYes
Raw Data File Type(s)fid
Analysis Type DetailNMR
Release Date2019-03-06
Release Version1
Gaofeng Xiong Gaofeng Xiong
https://dx.doi.org/10.21228/M8T10P
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000703
Project DOI:doi: 10.21228/M8T10P
Project Title:P4HA1 knockdown in the breast cell line MDA231
Project Summary:Determine the effect of knocking down P4HA1 in the MDA231 cell line (including alterations to metabolic pathways).
Institute:University of Kentucky
Department:Markey Cancer Center
Last Name:Xu
First Name:Ren
Address:BBSRC361, 741 South Limestone, Lexington, KY 40536, USA
Email:ren.xu2010@uky.edu
Phone:000-000-0000

Subject:

Subject ID:SU001202
Subject Type:Animal
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: Animal; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id protocol.id
SA0782851_MDA231_12C14NGln_shCTL_rep1-cells-polar_NMR_A12C14NGln_shCTL
SA0782865_MDA231_12C14NGln_shP4HA1_rep1-cells-polar_NMR_A12C14NGln_shP4HA1
SA0782872_MDA231_13C15NGln_shCTL_rep1-cells-polar_NMR_A13C15NGln_shCTL
SA0782884_MDA231_13C15NGln_shCTL_rep3-cells-polar_NMR_A13C15NGln_shCTL
SA0782893_MDA231_13C15NGln_shCTL_rep2-cells-polar_NMR_A13C15NGln_shCTL
SA0782908_MDA231_13C15NGln_shP4HA1_rep3-cells-polar_NMR_A13C15NGln_shP4HA1
SA0782916_MDA231_13C15NGln_shP4HA1_rep1-cells-polar_NMR_A13C15NGln_shP4HA1
SA0782927_MDA231_13C15NGln_shP4HA1_rep2-cells-polar_NMR_A13C15NGln_shP4HA1
Showing results 1 to 8 of 8

Collection:

Collection ID:CO001196
Collection Summary:Collection and quench of cells in culture
Collection Protocol ID:cell_quench_collection
Collection Protocol Filename:3A_Cells_Quench_Cell_Fan_20170412.pdf
Sample Type:cultured cells

Treatment:

Treatment ID:TR001217
Treatment Summary:Cells grown in unlabeled glutamine and infected with empty vector. Cells grown in unlabeled glutamine and infected with shP4HA1 lentivirus. Cells grown in labeled glutamine and infected with empty vector. Cells grown in labeled glutamine and infected with shP4HA1 lentivirus.
Treatment Protocol ID:12C14NGln_shCTL 12C14NGln_shP4HA1 13C15NGln_shCTL 13C15NGln_shP4HA1

Sample Preparation:

Sampleprep ID:SP001210
Sampleprep Summary:Polar extraction from cells. Protein extraction and quantification.
Sampleprep Protocol ID:polar_extraction protein_extraction
Sampleprep Protocol Filename:4B_Extract_Polar_Lipid_Prot_Fan_070417.pdf
4D_17Jun4_Fan_Prot_Quant.pdf

Analysis:

Analysis ID:AN001868
Analysis Type:NMR
Num Factors:4
Num Metabolites:187
Units:normalized peak area

NMR:

NMR ID:NM000146
Analysis ID:AN001868
Instrument Name:Agilent 600
Instrument Type:FT-NMR
NMR Experiment Type:PRESAT (1H1D)
Standard Concentration:0.5 mM
Spectrometer Frequency:600 MHz
NMR Probe:cryogenic triple resonance HCN
NMR Solvent:D20
NMR Tube Size:1.7 mm
Shimming Method:gradient shimming
Pulse Sequence:PRESAT
Water Suppression:presaturation
Chemical Shift Ref Cpd:DSS
Temperature:15 celsius
Acquisition Time:2 s
Relaxation Delay:4 s
Baseline Correction Method:Bernstein Polynomial
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