Summary of Study ST001307

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000888. The data can be accessed directly via it's Project DOI: 10.21228/M8WX1N This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST001307
Study TitleColorectal cancer diagnostic model utilizing metagenomic and metabolomic data of stool microbial extracellular vesicles
Study TypeMetabolomics profiling
Study SummaryMetabolomics and metagenomics-combined study to diagnose colorectal cancer using gut-microbiome-secreted extracellular vesicles
Institute
Seoul National University
Last NameKim
First NameDa Jung
AddressDaehak-ro 101, Seoul, Korea South
Emaildkim3193@gmail.com
Phone+821025205040
Submit Date2020-01-14
Raw Data AvailableYes
Raw Data File Type(s)smp
Analysis Type DetailGC-MS
Release Date2020-03-03
Release Version1
Da Jung Kim Da Jung Kim
https://dx.doi.org/10.21228/M8WX1N
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000888
Project DOI:doi: 10.21228/M8WX1N
Project Title:Colorectal cancer patients metabolomics data
Project Type:GCTOFMS metabolic profiling
Project Summary:Extracellular vesicles extracted from stool of colorectal cancer patients were analzed using GC-TOFMS
Institute:Seoul National University
Department:Department of Clinical pharmacology and therapeutics
Laboratory:Metabolomics
Last Name:Kim
First Name:Da Jung
Address:Daehak-ro 101, Seoul, Korea
Email:dkim3193@gmail.com
Phone:+821025205040
Funding Source:Korean government (MSIT)

Subject:

Subject ID:SU001381
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Group
SA094413CC35CC
SA094414CC16CC
SA094415CC21CC
SA094416CC32CC
SA094417CC13CC
SA094418CC05CC
SA094419CC31CC
SA094420CC07CC
SA094421CC19CC
SA094422CC24CC
SA094423CC28CC
SA094424CC06CC
SA094425CC10CC
SA094426CC27CC
SA094427CC22CC
SA094428CC17CC
SA094429CC26CC
SA094430CC04CC
SA094431CC09CC
SA094432CC01CC
SA094433CC30CC
SA094434CC33CC
SA094435CC02CC
SA094436CC11CC
SA094437CC25CC
SA094438CC34CC
SA094439CC20CC
SA094440CC15CC
SA094441CC08CC
SA094442CC36CC
SA094443CC14CC
SA094444CC23CC
SA094445CC18CC
SA094446CC12CC
SA094447CC03CC
SA094448CC29CC
SA094449NC31NC
SA094450NC34NC
SA094451NC17NC
SA094452NC16NC
SA094453NC15NC
SA094454NC30NC
SA094455NC37NC
SA094456NC20NC
SA094457NC14NC
SA094458NC22NC
SA094459NC35NC
SA094460NC39NC
SA094461NC04NC
SA094462NC32NC
SA094463NC19NC
SA094464NC11NC
SA094465NC07NC
SA094466NC40NC
SA094467NC10NC
SA094468NC18NC
SA094469NC01NC
SA094470NC38NC
SA094471NC28NC
SA094472NC12NC
SA094473NC23NC
SA094474NC13NC
SA094475NC29NC
SA094476NC09NC
SA094477NC03NC
SA094478NC26NC
SA094479NC24NC
SA094480NC21NC
SA094481NC06NC
SA094482NC08NC
SA094483NC33NC
SA094484NC27NC
SA094485NC25NC
SA094486NC36NC
SA094487NC02NC
SA094488NC05NC
Showing results 1 to 76 of 76

Collection:

Collection ID:CO001376
Collection Summary:Extracellular Vesicles were collected from the stool sample and then flash -frozen in deep-freezer.
Sample Type:Feces

Treatment:

Treatment ID:TR001396
Treatment Summary:Stool EV samples were isolated from colorectal cancer patients and normal healthy control sample.

Sample Preparation:

Sampleprep ID:SP001389
Sampleprep Summary:Extracellular vesicles were isolated from stool sample and washed twice in PBS.Frozen EV samples were thawed and prepared to analyze using gas chromatography time-of-flight mass spectrometry. Detailed experimental procedure is described in our previous study (Metabolomics 15, 30, doi:10.1007/s11306-019-1494-5 (2019))

Combined analysis:

Analysis ID AN002176
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890A
Column Agilent DB5-MS (30m x 0.25mm, 0.25um)
MS Type EI
MS instrument type GC-TOF
MS instrument name Leco Pegasus HT TOF
Ion Mode POSITIVE
Units relative intensity

Chromatography:

Chromatography ID:CH001592
Instrument Name:Agilent 7890A
Column Name:Agilent DB5-MS (30m x 0.25mm, 0.25um)
Chromatography Type:GC

MS:

MS ID:MS002024
Analysis ID:AN002176
Instrument Name:Leco Pegasus HT TOF
Instrument Type:GC-TOF
MS Type:EI
MS Comments:-
Ion Mode:POSITIVE
  logo