Summary of Study ST001498
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001014. The data can be accessed directly via it's Project DOI: 10.21228/M8MT3W This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST001498 |
Study Title | Interday validation of of developed quantatation method |
Study Summary | To validate this method , we spiked either taurine or sulfoquinovose into fecal supernatents and determined interday accuracy and precission of method |
Institute | Helmholtz Centre for Environmental Research |
Last Name | Haange |
First Name | Sven |
Address | Permoserstrasse 1, Leipzig, Saxony, 04318, Germany |
sven.haange@ufz.de | |
Phone | 0049 341 2351099 |
Submit Date | 2020-10-02 |
Raw Data Available | Yes |
Raw Data File Type(s) | wiff |
Analysis Type Detail | LC-MS |
Release Date | 2020-10-28 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR001014 |
Project DOI: | doi: 10.21228/M8MT3W |
Project Title: | A multiplexed quantitativeanalysis of five sulfonates in the intestinal microbiome |
Project Summary: | Our aim was to develop a method to quantify five of the sulfonates in the intestine and apply it in a simplified human microbiome model. These were taurine, its metabolic precursor cysteate and one of its degradation products isethionate, as well as sulfoquinovose and one of its most relevant degradation products 2,3-dihydroxy-1-propanesulfonate. |
Institute: | Helmholtz Centre for Environmental Research - UFZ |
Last Name: | Haange |
First Name: | Sven |
Address: | Permoserstrasse 1, Leipzig, Saxony, 04318, Germany |
Email: | sven.haange@ufz.de |
Phone: | 0049 341 2351099 |
Subject:
Subject ID: | SU001572 |
Subject Type: | Bacteria |
Subject Species: | Fecal Bacteria |
Species Group: | Bacteria |
Factors:
Subject type: Bacteria; Subject species: Fecal Bacteria (Factor headings shown in green)
mb_sample_id | local_sample_id | Sulfonate after Dilution (ng/mL) |
---|---|---|
SA126246 | Spike_00025_6 | 0.025 |
SA126247 | Spike_00025_7 | 0.025 |
SA126248 | Spike_00025_4 | 0.025 |
SA126249 | Spike_00025_2 | 0.025 |
SA126250 | Spike_00025_5 | 0.025 |
SA126251 | Spike_00025_1 | 0.025 |
SA126252 | Spike_00025_3 | 0.025 |
SA126253 | Spike_0005_4 | 0.5 |
SA126254 | Spike_0005_2 | 0.5 |
SA126255 | Spike_0005_6 | 0.5 |
SA126256 | Spike_0005_7 | 0.5 |
SA126257 | Spike_0005_1 | 0.5 |
SA126258 | Spike_0005_3 | 0.5 |
SA126259 | Spike_0005_5 | 0.5 |
SA126260 | Spike_00075_6 | 0.75 |
SA126261 | Spike_00075_3 | 0.75 |
SA126262 | Spike_00075_4 | 0.75 |
SA126263 | Spike_00075_2 | 0.75 |
SA126264 | Spike_00075_5 | 0.75 |
SA126265 | Spike_00075_7 | 0.75 |
SA126266 | Spike_00075_1 | 0.75 |
SA126267 | Spike_001_5 | 1 |
SA126268 | Spike_001_6 | 1 |
SA126269 | Spike_001_1 | 1 |
SA126270 | Spike_001_3 | 1 |
SA126271 | Spike_001_7 | 1 |
SA126272 | Spike_001_2 | 1 |
SA126273 | Spike_001_4 | 1 |
SA126302 | Spike_010_7 | 10 |
SA126303 | Spike_010_5 | 10 |
SA126304 | Spike_010_6 | 10 |
SA126305 | Spike_010_4 | 10 |
SA126306 | Spike_010_3 | 10 |
SA126307 | Spike_010_2 | 10 |
SA126308 | Spike_010_1 | 10 |
SA126323 | Spike_100_6 | 100 |
SA126324 | Spike_100_7 | 100 |
SA126325 | Spike_100_2 | 100 |
SA126326 | Spike_100_3 | 100 |
SA126327 | Spike_100_4 | 100 |
SA126328 | Spike_100_5 | 100 |
SA126329 | Spike_100_1 | 100 |
SA126274 | Spike_0015_1 | 1.5 |
SA126275 | Spike_0015_7 | 1.5 |
SA126276 | Spike_0015_2 | 1.5 |
SA126277 | Spike_0015_4 | 1.5 |
SA126278 | Spike_0015_5 | 1.5 |
SA126279 | Spike_0015_6 | 1.5 |
SA126280 | Spike_0015_3 | 1.5 |
SA126281 | Spike_002_4 | 2 |
SA126282 | Spike_002_5 | 2 |
SA126283 | Spike_002_6 | 2 |
SA126284 | Spike_002_7 | 2 |
SA126285 | Spike_002_2 | 2 |
SA126286 | Spike_002_3 | 2 |
SA126287 | Spike_002_1 | 2 |
SA126309 | Spike_020_1 | 20 |
SA126310 | Spike_020_2 | 20 |
SA126311 | Spike_020_5 | 20 |
SA126312 | Spike_020_7 | 20 |
SA126313 | Spike_020_4 | 20 |
SA126314 | Spike_020_6 | 20 |
SA126315 | Spike_020_3 | 20 |
SA126330 | Spike_200_1 | 200 |
SA126331 | Spike_200_7 | 200 |
SA126332 | Spike_200_6 | 200 |
SA126333 | Spike_200_2 | 200 |
SA126334 | Spike_200_4 | 200 |
SA126335 | Spike_200_3 | 200 |
SA126336 | Spike_200_5 | 200 |
SA126288 | Spike_003_7 | 3 |
SA126289 | Spike_003_1 | 3 |
SA126290 | Spike_003_4 | 3 |
SA126291 | Spike_003_2 | 3 |
SA126292 | Spike_003_5 | 3 |
SA126293 | Spike_003_6 | 3 |
SA126294 | Spike_003_3 | 3 |
SA126337 | Spike_300_5 | 300 |
SA126338 | Spike_300_3 | 300 |
SA126339 | Spike_300_7 | 300 |
SA126340 | Spike_300_4 | 300 |
SA126341 | Spike_300_1 | 300 |
SA126342 | Spike_300_6 | 300 |
SA126343 | Spike_300_2 | 300 |
SA126344 | Spike_450_5 | 450 |
SA126345 | Spike_450_3 | 450 |
SA126346 | Spike_450_2 | 450 |
SA126347 | Spike_450_6 | 450 |
SA126348 | Spike_450_4 | 450 |
SA126349 | Spike_450_7 | 450 |
SA126350 | Spike_450_1 | 450 |
SA126316 | Spike_050_2 | 50 |
SA126317 | Spike_050_6 | 50 |
SA126318 | Spike_050_3 | 50 |
SA126319 | Spike_050_5 | 50 |
SA126320 | Spike_050_7 | 50 |
SA126321 | Spike_050_1 | 50 |
SA126322 | Spike_050_4 | 50 |
SA126295 | Spike_006_1 | 6 |
SA126296 | Spike_006_4 | 6 |
Collection:
Collection ID: | CO001567 |
Collection Summary: | One g of the human fecal sample was homogenized in anoxic phosphate-buffered saline (PBS, pH 7.0, Table 4) by vortexing with glass beads (c. 3 mm; Roth, Germany) to yield a 10% fecal suspension. The fecal suspension was further diluted to 1% in a Hungate tube containing anoxic PBS supplemented with 3.18 mM of sterile filtered Ti(III) nitrilotriacetate (Sigma-Aldrich, Germany) as reductant. Subsequently, fecal slurry aliquotes were centrifuged (14.000 x g, 4°C, 5 min) and the supernatant frozen until further processing. |
Sample Type: | Feces |
Treatment:
Treatment ID: | TR001587 |
Treatment Summary: | Fecal slurries were s spiked with cysteate, sulfoquinovose (SQ), 2,3-dihydroxypropane-1-sulfonate (DHPS), taurine and isethionate . |
Sample Preparation:
Sampleprep ID: | SP001580 |
Sampleprep Summary: | Fecal supernatants were serially diluted using 50% acetonitrile and 0.1% formic acid in water to obtain final dilution of 1:10,000. 500 µl of each sample were placed in glass vials (Wicom, Heppenheim, Germany) and stored at - 80 °C until LC-MS/MS analysis.For the analysis of sulfonates by LC-MS/MS-MRM, aliquots of 250 µl for each sample were centrifuged (14 000 x g, 4 °C, 5 min) and 50 µl of the supernatant stored at – 20 °C until further processing. Samples were thawed, centrifuged at 18 000 x g at RT for 2 min and the supernatant was diluted 1:10 000 in 50% aqueous acetonitrile. Subsequently, 500 µl of each sample were placed in glass vials (Wicom, Heppenheim, Germany) and stored at - 80 °C until LC-MS/MS analysis. |
Sampleprep Protocol Filename: | sven_haange_Sample_preparation-application_experiment.pdf |
Combined analysis:
Analysis ID | AN002481 |
---|---|
Analysis type | MS |
Chromatography type | HILIC |
Chromatography system | Dionex 3000 HPLC (Dionex,Sunnyvale, USA) |
Column | BEH amide (100 x 2.1mm,1.7um) |
MS Type | ESI |
MS instrument type | Triple quadrupole |
MS instrument name | ABI Sciex 5500 QTrap |
Ion Mode | NEGATIVE |
Units | mM |
Chromatography:
Chromatography ID: | CH001818 |
Methods Filename: | sven_haange_20201002_055740_MS-parameters.pdf sven_haange_20201002_055740_LC_parameters-sulfonates.pdf |
Chromatography Comments: | BEH amide column, 2.1 x 100 mm, 1.7 µm, Waters, Milford, USA |
Instrument Name: | Dionex 3000 HPLC (Dionex,Sunnyvale, USA) |
Column Name: | BEH amide (100 x 2.1mm,1.7um) |
Chromatography Type: | HILIC |
MS:
MS ID: | MS002301 |
Analysis ID: | AN002481 |
Instrument Name: | ABI Sciex 5500 QTrap |
Instrument Type: | Triple quadrupole |
MS Type: | ESI |
MS Comments: | As softwar used Analyst 1.6.2 (Sciex) |
Ion Mode: | NEGATIVE |
Analysis Protocol File: | sven_haange_20201002_055740_LC_parameters-sulfonates.pdf |