Summary of Study ST002020

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001282. The data can be accessed directly via it's Project DOI: 10.21228/M80Q51 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

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Study IDST002020
Study TitleTIPs Metabolomics (urine)
Study SummaryA prospective cohort of 38 European (EA) and African American (AA) omnivorous females were recruited. Samples were collected pre-intervention while subjects consumed habitual animal-based diet, and following 4 days of interventional vegetarian diet.
Institute
Vanderbilt University Medical Center
Last NameFerguson
First NameJane
Address2220 Pierce Ave, PRB 354, Nashville, TN, 37232, USA
Emailjane.f.ferguson@vumc.org
Phone6158759896
Submit Date2021-12-13
Analysis Type DetailLC-MS
Release Date2022-01-17
Release Version1
Jane Ferguson Jane Ferguson
https://dx.doi.org/10.21228/M80Q51
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR001282
Project DOI:doi: 10.21228/M80Q51
Project Title:TIPs Metabolomics
Project Summary:Healthy omnivorous women underwent a short-term dietary intervention. Plasma and urine samples were collected before and after the 4-day vegetarian diet.
Institute:Vanderbilt University Medical Center
Last Name:Ferguson
First Name:Jane
Address:2220 Pierce Ave, PRB 354, Nashville, TN, 37232, USA
Email:jane.f.ferguson@vumc.org
Phone:6158759896

Subject:

Subject ID:SU002102
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Gender:Female

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Diet Study Phase
SA189277MB-13_V2Post 1
SA189278MB-12_V2Post 1
SA189279MB-11_V2Post 1
SA189280MB-14_V2Post 1
SA189281MB-09_V2Post 1
SA189282MB-15_V2Post 1
SA189283MB-19_V2Post 1
SA189284MB-17_V2Post 1
SA189285MB-16_V2Post 1
SA189286MB-08_V2Post 1
SA189287MB-10_V2Post 1
SA189288MB-04_V2Post 1
SA189289MB-03_V2Post 1
SA189290MB-02_V2Post 1
SA189291MB-06_V2Post 1
SA189292MB-05_V2Post 1
SA189293MB-07_V2Post 1
SA189294MB-38_V2Post 2
SA189295MB-25_V2Post 2
SA189296MB-24_V2Post 2
SA189297MB-35_V2Post 2
SA189298MB-33_V2Post 2
SA189299MB-22_V2Post 2
SA189300MB-23_V2Post 2
SA189301MB-26_V2Post 2
SA189302MB-37_V2Post 2
SA189303MB-30_V2Post 2
SA189304MB-32_V2Post 2
SA189305MB-31_V2Post 2
SA189306MB-36_V2Post 2
SA189307MB-29_V2Post 2
SA189308MB-27_V2Post 2
SA189309MB-34_V2Post 2
SA189310MB-21_V2Post 2
SA189311MB-20_V2Post 2
SA189312MB-09_V1Pre 1
SA189313MB-10_V1Pre 1
SA189314MB-11_V1Pre 1
SA189315MB-13_V1Pre 1
SA189316MB-08_V1Pre 1
SA189317MB-07_V1Pre 1
SA189318MB-03_V1Pre 1
SA189319MB-04_V1Pre 1
SA189320MB-05_V1Pre 1
SA189321MB-06_V1Pre 1
SA189322MB-14_V1Pre 1
SA189323MB-12_V1Pre 1
SA189324MB-19_V1Pre 1
SA189325MB-02_V1Pre 1
SA189326MB-16_V1Pre 1
SA189327MB-17_V1Pre 1
SA189328MB-15_V1Pre 1
SA189329MB-23_V1Pre 2
SA189330MB-36_V1Pre 2
SA189331MB-29_V1Pre 2
SA189332MB-37_V1Pre 2
SA189333MB-20_V1Pre 2
SA189334MB-22_V1Pre 2
SA189335MB-38_V1Pre 2
SA189336MB-35_V1Pre 2
SA189337MB-24_V1Pre 2
SA189338MB-26_V1Pre 2
SA189339MB-31_V1Pre 2
SA189340MB-21_V1Pre 2
SA189341MB-32_V1Pre 2
SA189342MB-25_V1Pre 2
SA189343MB-34_V1Pre 2
SA189344MB-27_V1Pre 2
SA189345MB-33_V1Pre 2
SA189346MB-30_V1Pre 2
Showing results 1 to 70 of 70

Collection:

Collection ID:CO002095
Collection Summary:Whole blood (EDTA tube) and midstream urine samples were collected in the early mornings of study days 1 and 6 with subjects in a 10-hour fasted state.
Sample Type:Urine

Treatment:

Treatment ID:TR002114
Treatment Summary:All participants completed a dietary intervention. Vegetarian menus encompassing four days of 3 meals and 2 snacks per day were developed. Menus were designed to be a major shift from habitual omnivorous intakes by eliminating all meat, fish, poultry, eggs, and dairy products.

Sample Preparation:

Sampleprep ID:SP002108
Sampleprep Summary:Urine samples were prepared for metabolomics anayses at Metabolon Inc.

Combined analysis:

Analysis ID AN003290
Analysis type MS
Chromatography type Unspecified
Chromatography system none
Column none
MS Type ESI
MS instrument type Other
MS instrument name Thermo Q Exactive Orbitrap
Ion Mode UNSPECIFIED
Units osmolality normalized scaled imputed

Chromatography:

Chromatography ID:CH002430
Instrument Name:none
Column Name:none
Chromatography Type:Unspecified

MS:

MS ID:MS003061
Analysis ID:AN003290
Instrument Name:Thermo Q Exactive Orbitrap
Instrument Type:Other
MS Type:ESI
MS Comments:Extracts were divided into fractions for analysis: two for analysis by two separate reverse phase (RP)/UPLC-MS/MS methods with positive ion mode electrospray ionization (ESI), one for analysis by RP/UPLC-MS/MS with negative ion mode ESI, and one for analysis by HILIC/UPLC-MS/MS with negative ion mode ESI.
Ion Mode:UNSPECIFIED
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