Summary of Study ST002494

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001610. The data can be accessed directly via it's Project DOI: 10.21228/M8KT5B This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002494
Study TitleDisrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa (Part 1)
Study SummaryAnorexia nervosa (AN) is an eating disorder with a high mortality affecting about 1% of women, where no evidence-based effective treatment exists. The pathogenesis likely involves genetic and environmental alterations. We hypothesized that a disrupted gut microbiota contributes to AN pathogenesis. In analyses comparing 70 AN with 77 healthy females, we found multiple taxa, functional modules, structural variants and growth rates of bacterial gut microbiota, and viral gut microbiota that were altered in AN with parts of these perturbations linked to estimates of eating behavior and mental health. In silico, causal inference analyses implied serum bacterial metabolites mediated parts of the impact of altered gut microbiota on AN behavior, and in vivo, three independent fecal microbiota transplantation from AN cases to germ-free mice under energy restricted feeding mirroring AN eating behavior consistently induced a lower body weight gain and hypothalamic and adipose tissue gene expressions related to aberrant energy metabolism and eating and mental behavior.
Institute
Örebro University
Last NameMcGlinchey
First NameAidan
AddressRoom 2217, Södra Grev Rosengatan 30, 70362 Örebro
Emailaidan.mcglinchey@oru.se
Phone+46 0736485638
Submit Date2022-05-18
Raw Data AvailableYes
Raw Data File Type(s)mzML
Analysis Type DetailGC-MS
Release Date2023-02-27
Release Version1
Aidan McGlinchey Aidan McGlinchey
https://dx.doi.org/10.21228/M8KT5B
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR001610
Project DOI:doi: 10.21228/M8KT5B
Project Title:Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa
Project Summary:Anorexia nervosa (AN) is an eating disorder with a high mortality affecting about 0.5% of women, where no evidence-based effective treatment exists. The pathogenesis likely involves genetic and environmental alterations. We hypothesized that a disrupted gut microbiota contributes to AN pathology. In analyses comparing 70 AN with 77 healthy females, we found multiple taxa, functional modules, structural variants and growth rates of bacterial gut microbiota, and viral gut microbiota that were altered in AN with parts of these perturbations linked to estimates of eating behavior and mental health. In silico, causal inference analyses implied bacterial metabolites mediated parts of the impact of altered gut microbiota on AN behavior, and in vivo, fecal microbiota transplantation from AN cases to germ-free mice induced a lower body weight and hypothalamic and adipose tissue gene expressions related to aberrant energy metabolism and eating and mental behavior.
Institute:Örebro University
Last Name:McGlinchey
First Name:Aidan
Address:Room 2217, Södra Grev Rosengatan 30, 70362 Örebro
Email:aidan.mcglinchey@oru.se
Phone:+46 0736485638

Subject:

Subject ID:SU002588
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Gender:Male and female

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Category
SA249144sample_00681 - Healthy
SA249145sample_00671 - Healthy
SA249146sample_01191 - Healthy
SA249147sample_01151 - Healthy
SA249148sample_00661 - Healthy
SA249149sample_00731 - Healthy
SA249150sample_00761 - Healthy
SA249151sample_00011 - Healthy
SA249152sample_00741 - Healthy
SA249153sample_01201 - Healthy
SA249154sample_00721 - Healthy
SA249155sample_01221 - Healthy
SA249156sample_00521 - Healthy
SA249157sample_00501 - Healthy
SA249158sample_00491 - Healthy
SA249159sample_01271 - Healthy
SA249160sample_00531 - Healthy
SA249161sample_00541 - Healthy
SA249162sample_01241 - Healthy
SA249163sample_00571 - Healthy
SA249164sample_00561 - Healthy
SA249165sample_01141 - Healthy
SA249166sample_01131 - Healthy
SA249167sample_00961 - Healthy
SA249168sample_01041 - Healthy
SA249169sample_00941 - Healthy
SA249170sample_01051 - Healthy
SA249171sample_00971 - Healthy
SA249172sample_00981 - Healthy
SA249173sample_01011 - Healthy
SA249174sample_01001 - Healthy
SA249175sample_00991 - Healthy
SA249176sample_00921 - Healthy
SA249177sample_00911 - Healthy
SA249178sample_01081 - Healthy
SA249179sample_00831 - Healthy
SA249180sample_01091 - Healthy
SA249181sample_01101 - Healthy
SA249182sample_01071 - Healthy
SA249183sample_00861 - Healthy
SA249184sample_00901 - Healthy
SA249185sample_00881 - Healthy
SA249186sample_00871 - Healthy
SA249187sample_01281 - Healthy
SA249188sample_00511 - Healthy
SA249189sample_00211 - Healthy
SA249190sample_00201 - Healthy
SA249191sample_00181 - Healthy
SA249192sample_01431 - Healthy
SA249193sample_00241 - Healthy
SA249194sample_00261 - Healthy
SA249195sample_01361 - Healthy
SA249196sample_01371 - Healthy
SA249197sample_01291 - Healthy
SA249198sample_00161 - Healthy
SA249199sample_00151 - Healthy
SA249200sample_00091 - Healthy
SA249201sample_00071 - Healthy
SA249202sample_00061 - Healthy
SA249203sample_01481 - Healthy
SA249204sample_00101 - Healthy
SA249205sample_00111 - Healthy
SA249206sample_01441 - Healthy
SA249207sample_00131 - Healthy
SA249208sample_00121 - Healthy
SA249209sample_00311 - Healthy
SA249210sample_00271 - Healthy
SA249211sample_01341 - Healthy
SA249212sample_01301 - Healthy
SA249213sample_01331 - Healthy
SA249214sample_00421 - Healthy
SA249215sample_00401 - Healthy
SA249216sample_00361 - Healthy
SA249217sample_00341 - Healthy
SA249218sample_00321 - Healthy
SA249219sample_00441 - Healthy
SA249220sample_00451 - Healthy
SA249221sample_00371 - Healthy
SA249222sample_01262 - Anorexia
SA249223sample_01322 - Anorexia
SA249224sample_01062 - Anorexia
SA249225sample_01452 - Anorexia
SA249226sample_01472 - Anorexia
SA249227sample_01462 - Anorexia
SA249228sample_01032 - Anorexia
SA249229sample_01312 - Anorexia
SA249230sample_01232 - Anorexia
SA249231sample_01182 - Anorexia
SA249232sample_01392 - Anorexia
SA249233sample_01382 - Anorexia
SA249234sample_01352 - Anorexia
SA249235sample_01162 - Anorexia
SA249236sample_01402 - Anorexia
SA249237sample_01122 - Anorexia
SA249238sample_01422 - Anorexia
SA249239sample_01172 - Anorexia
SA249240sample_01212 - Anorexia
SA249241sample_01412 - Anorexia
SA249242sample_01112 - Anorexia
SA249243sample_01252 - Anorexia
Showing page 1 of 2     Results:    1  2  Next     Showing results 1 to 100 of 148

Collection:

Collection ID:CO002581
Collection Summary:Analysis of serum polar metabolites by gas chromatography - time-of-flght mass spectrometry The metabolites listed as gut microbiota-related metabolites is based on literature mining 77,78 . Serum samples were randomized, and the sample preparation was done as described previously 43,79 . Shortly, 400 μL of MeOH containing internal standards (heptadecanoic acid, deuterium-labeled DL-valine, deuterium- labeled succinic acid, and deuterium-labeled glutamic acid, c= 1 μg/ml) was added to 30 μl of the serum samples which were vortex mixed and incubated on ice for 30 min after which they were centrifuged (9400 × g, 3 min) and 350 μL of the supernatant was collected after centrifugation. The solvent was evaporated to dryness and 25 μL of MOX reagent was added and the sample was incubated for 60 min at 45 °C. 25 μL of N-Methyl-N-(trimethylsilyl)trifluoroacetamide (MSTFA) was added and after 60 min incubation at 45 °C 25 μL of the retention index standard mixture (n-alkanes, c=10 μg/ml) was added. The analyses were done by Agilent 7890B gas chromatography (GC) coupled to Agilent 7200 auadrupole time-of-flight mass spectrometry (Q-TOF MS) (Agilent Technologies, Palo Alto, CA, USA). Injection volume 1 μL with 100:1 split on PTV at 70 °C, heating to 300 °C at 120 °C /min. Column: Zebron ZB- SemiVolatiles. Length: 20m, I.D. 0.18mm, film thickness: 0.18 μm. With initial Helium flow 1.2 mL/min, increasing to 2.4 mL/min after 16 mins. Oven temperature program: 50 °C (5 min), then to 270°C at 20 °/min and then to 300 at 40 °/min (5 min). EI source: 250 °C, 70 eV electron energy, 35μA emission, solvent delay 3 min. Mass range 55 to 650 amu, acquisition rate 5 spectra/s, acquisition time 200 ms/spectrum. Quad at 150 °C, 1.5 mL/min N2 collision flow, aux-2 temperature: 280 °C. Calibration curves were constructed using alanine, citric acid, fumaric acid, glutamic acid, glycine, lactic acid, malic acid, 2-hydroxybutyric acid, 3-hydroxybutyric acid, linoleic acid, oleic acid, palmitic acid, stearic acid, cholesterol, fructose, glutamine, indole-3-propionic acid, isoleucine, leucine, proline, succinic acid, valine, asparagine, aspartic acid, arachidonic acid, glycerol-3-phosphate, lysine, methionine, ornithine, phenylalanine, serine and threonine purchased from Sigma-Aldrich (St. Louis, MO, USA) at concentration range of 0.1 to 80 μg/ml. An aliquot of each sample was collected and pooled and used as quality control samples, together with National Institute of Standards and Technology (NIST) CRM1950 serum sample, an in-house pooled serum sample. The relative standard deviation of the concentrations was on average 16% for the pooled QC samples, 10% for the NIST samples. Analysis of serum bile acids and serum semipolar metabolites The sample preparation procedure was performed as described previously 80 . The plate was preconditioned with 450 μL acetonitrile before the addition of 100 μL of sample and 10 μL of PFAS and BA internal standard mixture (200 ng/mL and 1000 ng/mL respectively). Thereafter, 450 μL of acetonitrile containing 1% formic acid were added to each well and the samples extracted using a 10” vacuum manifold. The eluate was evaporated to dryness under nitrogen gas flow and reconstituted to 80 μL of MeOH/2 mM aqueous NH4AC. Chromatographic separation was carried out using an Acquity UPLC BEH C18 column (100 mm × 2.1 mm i.d., 1.7 μm particle size), fitted with a C18 precolumn (Waters Corporation, Wexford, Ireland). Mobile phase A consisted of H2O:MeOH (v/v 70:30) and mobile phase B of MeOH with both phases containing 2mM ammonium acetate as an ionization agent. The flow rate was set at 0.4 mLmin-1 with the elution gradient as follows: 0-1.5 min, mobile phase B was increased from 5% to 30%; 1.5-4.5 min, mobile phase B increased to 70%; 4.5-7.5 min, mobile phase B increased to 100% and held for 5.5 min. A post-time of 5 min was used to regain the initial conditions for the next analysis. The total run time per sample was 18 min. The dual ESI ionization source was settings were as follows: capillary voltage was 4.5 kV, nozzle voltage 1500 V, N2 pressure in the nebulized was 21 psi and the N2 flow rate and temperature as sheath gas was 11 L min-1 and 379 °C, respectively. In order to obtain accurate mass spectra in MS scan, the m/z range was set to 100-1700 in negative ion mode. MassHunter B.06.01 software (Agilent Technologies, Santa Clara, CA, USA) was used for all data acquisition. Identification of compounds was done by in-house spectral library using MS (and retention time), MS/MS information. Quantitation was based on a matrix matched calibration curve spiked with native compounds. The calibration curve consisted of concentrations ranging from 0 – 1600 ng mL -1 for BAs. The RSD for the BAs was on average 17.8 % for the QC samples and 19.4 % for the NIST samples.
Sample Type:Blood (serum)
Storage Conditions:-80℃

Treatment:

Treatment ID:TR002600
Treatment Summary:No treatment was applied.

Sample Preparation:

Sampleprep ID:SP002594
Sampleprep Summary:Analysis of serum polar metabolites by gas chromatography - time-of-flght mass spectrometry The metabolites listed as gut microbiota-related metabolites is based on literature mining 77,78 . Serum samples were randomized, and the sample preparation was done as described previously 43,79 . Shortly, 400 μL of MeOH containing internal standards (heptadecanoic acid, deuterium-labeled DL-valine, deuterium- labeled succinic acid, and deuterium-labeled glutamic acid, c= 1 μg/ml) was added to 30 μl of the serum samples which were vortex mixed and incubated on ice for 30 min after which they were centrifuged (9400 × g, 3 min) and 350 μL of the supernatant was collected after centrifugation. The solvent was evaporated to dryness and 25 μL of MOX reagent was added and the sample was incubated for 60 min at 45 °C. 25 μL of N-Methyl-N-(trimethylsilyl)trifluoroacetamide (MSTFA) was added and after 60 min incubation at 45 °C 25 μL of the retention index standard mixture (n-alkanes, c=10 μg/ml) was added. The analyses were done by Agilent 7890B gas chromatography (GC) coupled to Agilent 7200 auadrupole time-of-flight mass spectrometry (Q-TOF MS) (Agilent Technologies, Palo Alto, CA, USA). Injection volume 1 μL with 100:1 split on PTV at 70 °C, heating to 300 °C at 120 °C /min. Column: Zebron ZB- SemiVolatiles. Length: 20m, I.D. 0.18mm, film thickness: 0.18 μm. With initial Helium flow 1.2 mL/min, increasing to 2.4 mL/min after 16 mins. Oven temperature program: 50 °C (5 min), then to 270°C at 20 °/min and then to 300 at 40 °/min (5 min). EI source: 250 °C, 70 eV electron energy, 35μA emission, solvent delay 3 min. Mass range 55 to 650 amu, acquisition rate 5 spectra/s, acquisition time 200 ms/spectrum. Quad at 150 °C, 1.5 mL/min N2 collision flow, aux-2 temperature: 280 °C. Calibration curves were constructed using alanine, citric acid, fumaric acid, glutamic acid, glycine, lactic acid, malic acid, 2-hydroxybutyric acid, 3-hydroxybutyric acid, linoleic acid, oleic acid, palmitic acid, stearic acid, cholesterol, fructose, glutamine, indole-3-propionic acid, isoleucine, leucine, proline, succinic acid, valine, asparagine, aspartic acid, arachidonic acid, glycerol-3-phosphate, lysine, methionine, ornithine, phenylalanine, serine and threonine purchased from Sigma-Aldrich (St. Louis, MO, USA) at concentration range of 0.1 to 80 μg/ml. An aliquot of each sample was collected and pooled and used as quality control samples, together with National Institute of Standards and Technology (NIST) CRM1950 serum sample, an in-house pooled serum sample. The relative standard deviation of the concentrations was on average 16% for the pooled QC samples, 10% for the NIST samples. Analysis of serum bile acids and serum semipolar metabolites The sample preparation procedure was performed as described previously 80 . The plate was preconditioned with 450 μL acetonitrile before the addition of 100 μL of sample and 10 μL of PFAS and BA internal standard mixture (200 ng/mL and 1000 ng/mL respectively). Thereafter, 450 μL of acetonitrile containing 1% formic acid were added to each well and the samples extracted using a 10” vacuum manifold. The eluate was evaporated to dryness under nitrogen gas flow and reconstituted to 80 μL of MeOH/2 mM aqueous NH4AC. Chromatographic separation was carried out using an Acquity UPLC BEH C18 column (100 mm × 2.1 mm i.d., 1.7 μm particle size), fitted with a C18 precolumn (Waters Corporation, Wexford, Ireland). Mobile phase A consisted of H2O:MeOH (v/v 70:30) and mobile phase B of MeOH with both phases containing 2mM ammonium acetate as an ionization agent. The flow rate was set at 0.4 mLmin-1 with the elution gradient as follows: 0-1.5 min, mobile phase B was increased from 5% to 30%; 1.5-4.5 min, mobile phase B increased to 70%; 4.5-7.5 min, mobile phase B increased to 100% and held for 5.5 min. A post-time of 5 min was used to regain the initial conditions for the next analysis. The total run time per sample was 18 min. The dual ESI ionization source was settings were as follows: capillary voltage was 4.5 kV, nozzle voltage 1500 V, N2 pressure in the nebulized was 21 psi and the N2 flow rate and temperature as sheath gas was 11 L min-1 and 379 °C, respectively. In order to obtain accurate mass spectra in MS scan, the m/z range was set to 100-1700 in negative ion mode. MassHunter B.06.01 software (Agilent Technologies, Santa Clara, CA, USA) was used for all data acquisition. Identification of compounds was done by in-house spectral library using MS (and retention time), MS/MS information. Quantitation was based on a matrix matched calibration curve spiked with native compounds. The calibration curve consisted of concentrations ranging from 0 – 1600 ng mL -1 for BAs. The RSD for the BAs was on average 17.8 % for the QC samples and 19.4 % for the NIST samples.

Combined analysis:

Analysis ID AN004092
Analysis type MS
Chromatography type Reversed phase
Chromatography system Agilent 7890B
Column Waters ACQUITY UPLC BEH C18 (100 x 2.1mm,1.7um)
MS Type EI
MS instrument type QTOF
MS instrument name Agilent 7200 QTOF
Ion Mode NEGATIVE
Units Raw output from software

Chromatography:

Chromatography ID:CH003030
Chromatography Summary:The plate was preconditioned with 450 μL acetonitrile before the addition of 100 μL of sample and 10 μL of PFAS and BA internal standard mixture (200 ng/mL and 1000 ng/mL respectively). Thereafter, 450 μL of acetonitrile containing 1% formic acid were added to each well and the samples extracted using a 10” vacuum manifold. The eluate evaporated to dryness under nitrogen gas flow and reconstituted to 80 μL of MeOH/2 mM aqueous NH4AC. Chromatographic separation was carried out using an Acquity UPLC BEH C18 column (100 mm × 2.1 mm i.d., 1.7 μm particle size), fitted with a C18 precolumn (Waters Corporation, Wexford, Ireland). Mobile phase A consisted of H2O:MeOH (v/v 70:30) and mobile phase B of MeOH with both phases containing 2mM ammonium acetate as an ionization agent. The flow rate was set at 0.4 mLmin-1 with the elution gradient as follows: 0-1.5 min, mobile phase B was increased from 5% to 30%; 1.5-4.5 min, mobile phase B increased to 70%; 4.5-7.5 min, mobile phase B increased to 100% and held for 5.5 min. A post-time of 5 min was used to regain the initial conditions for the next analysis. The total run time per sample was 18 min. The dual ESI ionization source was settings were as follows: capillary voltage was 4.5 kV, nozzle voltage 1500 V, N2 pressure in the nebulized was 21 psi and the N2 flow rate and temperature as sheath gas was 11 L min-1 and 379 °C, respectively.
Instrument Name:Agilent 7890B
Column Name:Waters ACQUITY UPLC BEH C18 (100 x 2.1mm,1.7um)
Column Temperature:70
Flow Gradient:The elution gradient was as follows: 0-1.5 min, mobile phase B was increased from 5% to 30%; 1.5-4.5 min, mobile phase B increased to 70%; 4.5-7.5 min, mobile phase B increased to 100% and held for 5.5 min. A post-time of 5 min was used to regain the initial conditions for the next analysis. The total run time per sample was 18 min.
Flow Rate:0.4ml/min
Solvent A:70% water/30% methanol
Solvent B:100% methanol
Chromatography Type:Reversed phase

MS:

MS ID:MS003839
Analysis ID:AN004092
Instrument Name:Agilent 7200 QTOF
Instrument Type:QTOF
MS Type:EI
MS Comments:MassHunter B.06.01 software (Agilent Technologies, Santa Clara, CA, USA) was used for all data acquisition. Identification of compounds was done by in-house spectral library using MS (and retention time), MS/MS information. Quantitation was based on a matrix matched calibration curve spiked with native compounds. The calibration curve consisted of concentrations ranging from 0 – 1600 ng mL -1 for BAs. The RSD for the BAs was on average 17.8 % for the QC samples and 19.4 % for the NIST samples.
Ion Mode:NEGATIVE
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