Summary of Study ST003741

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR002327. The data can be accessed directly via it's Project DOI: 10.21228/M8V24V This work is supported by NIH grant, U2C- DK119886.

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This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST003741
Study TitleA Metabolite-Based Resistance Mechanism Against Malaria
Study SummaryJaundice is a common clinical presentation of Plasmodium (P.) falciparum malaria, arising from the accumulation of circulating bilirubin. Whether the active production of this lipophilic yellow pigment by biliverdin reductase A (BVRA) represents an adaptive or maladaptive response to Plasmodium infection is not understood. Here we found that the transition of P. falciparum infection from asymptomatic towards symptomatic malaria was associated with a >10-fold reduction in the ratio of circulating unconjugated bilirubin over parasite burden. Genetic deletion of Blvra in mice suppressed bilirubin production and precipitated malaria mortality, owed to higher parasite burden and virulence. Inhibition of bilirubin conjugation by the repression of hepatic UDP glucuronosyltransferase family 1 member A1 (UGT1A1), increased the levels of circulating unconjugated bilirubin and prevented malaria mortality. Unconjugated bilirubin targeted P. falciparum directly inside red blood cells (RBC) to suppress mitochondrion pyrimidine synthesis and inhibit the formation of hemozoin crystals, compromising the parasite´s food vacuole´s capacity to detoxify heme and extract essential amino acids (AA) from hemoglobin. In conclusion, jaundice represents an evolutionary conserved metabolic response to Plasmodium spp. infection that limits malaria severity.
Institute
European Molecular Biology Laboratory
DepartmentEMBL Heidelberg
Last NameDrotleff
First NameBernhard
AddressMeyerhofstr. 1, Heidelberg, BW, 69117, Germany
Emailbernhard.drotleff@embl.de
Phonenone
Submit Date2025-02-18
Publicationsin preparation
Raw Data AvailableYes
Raw Data File Type(s)raw(Thermo)
Analysis Type DetailLC-MS
Release Date2025-03-24
Release Version1
Bernhard Drotleff Bernhard Drotleff
https://dx.doi.org/10.21228/M8V24V
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR002327
Project DOI:doi: 10.21228/M8V24V
Project Title:A Metabolite-Based Resistance Mechanism Against Malaria
Project Summary:Jaundice is a common clinical presentation of Plasmodium (P.) falciparum malaria, arising from the accumulation of circulating bilirubin. Whether the active production of this lipophilic yellow pigment by biliverdin reductase A (BVRA) represents an adaptive or maladaptive response to Plasmodium infection is not understood. Here we found that the transition of P. falciparum infection from asymptomatic towards symptomatic malaria was associated with a >10-fold reduction in the ratio of circulating unconjugated bilirubin over parasite burden. Genetic deletion of Blvra in mice suppressed bilirubin production and precipitated malaria mortality, owed to higher parasite burden and virulence. Inhibition of bilirubin conjugation by the repression of hepatic UDP glucuronosyltransferase family 1 member A1 (UGT1A1), increased the levels of circulating unconjugated bilirubin and prevented malaria mortality. Unconjugated bilirubin targeted P. falciparum directly inside red blood cells (RBC) to suppress mitochondrion pyrimidine synthesis and inhibit the formation of hemozoin crystals, compromising the parasite´s food vacuole´s capacity to detoxify heme and extract essential amino acids (AA) from hemoglobin. In conclusion, jaundice represents an evolutionary conserved metabolic response to Plasmodium spp. infection that limits malaria severity.
Institute:European Molecular Biology Laboratory
Department:EMBL Heidelberg
Last Name:Drotleff
First Name:Bernhard
Address:Meyerhofstr. 1, Heidelberg, BW, 69117, Germany
Email:bernhard.drotleff@embl.de
Phone:none
Publications:in preparation
Contributors:Ana Figueiredo, Sonia Trikha Rastogi, Susana Ramos, Fátima Nogueira, Katherine De Villiers, António G. Gonçalves de Sousa, Lasse Votborg-Novél, Cäcilie von Wedel, Pinkus Tober-Lau, Elisa Jentho, Sara Pagnotta, Miguel Mesquita, Silvia Cardoso, Giulia Bortolussi, Andres Munro, Erin M. Tranfield, Jessica Thibaud, Denise Duarte, Ana Laura Sousa, Sandra N. Pinto, Jamil Kitoko, Ghyslain Mombo-Ngoma, Johannes Mischlinger, Sini Junttila, Marta Alenquer, Maria João Amorim, Chirag Vasavda, Piter J. Bosma, Sara Violante, Bernhard Drotleff, Tiago Paixão, Silvia Portugal, Florian Kurth, Laura L. Elo, Bindu Paul, Rui Martins & Miguel P. Soares

Subject:

Subject ID:SU003873
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Treatment Timepoint Sample source
SA407978neg h_Blank_2Blank 12h Blank
SA407979pos h_Blank_3Blank 12h Blank
SA407980pos h_Blank_2Blank 12h Blank
SA407981neg h_Blank_1Blank 12h Blank
SA407982pos h_Blank_1Blank 12h Blank
SA407983neg h_Blank_3Blank 12h Blank
SA407984neg8h_Blank_2Blank 8h Blank
SA407985pos8h_Blank_3Blank 8h Blank
SA407986pos8h_Blank_2Blank 8h Blank
SA407987neg8h_Blank_1Blank 8h Blank
SA407988neg8h_Blank_3Blank 8h Blank
SA407989pos8h_Blank_1Blank 8h Blank
SA408030pos h_RBC-BR_2non-infected Bilirubin 12h Red blood cells
SA408031pos h_RBC-BR_1non-infected Bilirubin 12h Red blood cells
SA408032neg h_RBC-BR_1non-infected Bilirubin 12h Red blood cells
SA408033pos h_RBC-BR_4non-infected Bilirubin 12h Red blood cells
SA408034pos h_RBC-BR_3non-infected Bilirubin 12h Red blood cells
SA408035pos h_RBC-BR_5non-infected Bilirubin 12h Red blood cells
SA408036neg h_RBC-BR_5non-infected Bilirubin 12h Red blood cells
SA408037neg h_RBC-BR_4non-infected Bilirubin 12h Red blood cells
SA408038neg h_RBC-BR_3non-infected Bilirubin 12h Red blood cells
SA408039neg h_RBC-BR_2non-infected Bilirubin 12h Red blood cells
SA408040neg8h_RBC-BR_1non-infected Bilirubin 8h Red blood cells
SA408041neg8h_RBC-BR_2non-infected Bilirubin 8h Red blood cells
SA408042neg8h_RBC-BR_3non-infected Bilirubin 8h Red blood cells
SA408043neg8h_RBC-BR_4non-infected Bilirubin 8h Red blood cells
SA408044neg8h_RBC-BR_5non-infected Bilirubin 8h Red blood cells
SA408045pos8h_RBC-BR_2non-infected Bilirubin 8h Red blood cells
SA408046pos8h_RBC-BR_3non-infected Bilirubin 8h Red blood cells
SA408047pos8h_RBC-BR_4non-infected Bilirubin 8h Red blood cells
SA408048pos8h_RBC-BR_5non-infected Bilirubin 8h Red blood cells
SA408049pos8h_RBC-BR_1non-infected Bilirubin 8h Red blood cells
SA408050pos h_RBC-DMSO_2non-infected DMSO 12h Red blood cells
SA408051pos h_RBC-DMSO_1non-infected DMSO 12h Red blood cells
SA408052pos h_RBC-DMSO_3non-infected DMSO 12h Red blood cells
SA408053pos h_RBC-DMSO_4non-infected DMSO 12h Red blood cells
SA408054pos h_RBC-DMSO_5non-infected DMSO 12h Red blood cells
SA408055neg h_RBC-DMSO_3non-infected DMSO 12h Red blood cells
SA408056neg h_RBC-DMSO_1non-infected DMSO 12h Red blood cells
SA408057neg h_RBC-DMSO_4non-infected DMSO 12h Red blood cells
SA408058neg h_RBC-DMSO_2non-infected DMSO 12h Red blood cells
SA408059neg h_RBC-DMSO_5non-infected DMSO 12h Red blood cells
SA408060pos8h_RBC-DMSO_5non-infected DMSO 8h Red blood cells
SA408061pos8h_RBC-DMSO_4non-infected DMSO 8h Red blood cells
SA408062pos8h_RBC-DMSO_1non-infected DMSO 8h Red blood cells
SA408063pos8h_RBC-DMSO_2non-infected DMSO 8h Red blood cells
SA408064pos8h_RBC-DMSO_3non-infected DMSO 8h Red blood cells
SA408065neg8h_RBC-DMSO_5non-infected DMSO 8h Red blood cells
SA408066neg8h_RBC-DMSO_4non-infected DMSO 8h Red blood cells
SA408067neg8h_RBC-DMSO_3non-infected DMSO 8h Red blood cells
SA408068neg8h_RBC-DMSO_1non-infected DMSO 8h Red blood cells
SA408069neg8h_RBC-DMSO_2non-infected DMSO 8h Red blood cells
SA407990neg h_iRBC-BR_4Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407991pos h_iRBC-BR_1Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407992pos h_iRBC-BR_3Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407993neg h_iRBC-BR_5Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407994pos h_iRBC-BR_2Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407995neg h_iRBC-BR_3Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407996neg h_iRBC-BR_2Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407997neg h_iRBC-BR_1Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407998pos h_iRBC-BR_4Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA407999pos h_iRBC-BR_5Plasmodium falciparum infected Bilirubin 12h Red blood cells
SA408000neg8h_iRBC-BR_1Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408001pos8h_iRBC-BR_3Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408002pos8h_iRBC-BR_4Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408003pos8h_iRBC-BR_5Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408004pos8h_iRBC-BR_2Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408005neg8h_iRBC-BR_5Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408006neg8h_iRBC-BR_4Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408007neg8h_iRBC-BR_3Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408008neg8h_iRBC-BR_2Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408009pos8h_iRBC-BR_1Plasmodium falciparum infected Bilirubin 8h Red blood cells
SA408010pos h_iRBC-DMSO_1Plasmodium falciparum infected DMSO 12h Red blood cells
SA408011neg h_iRBC-DMSO_3Plasmodium falciparum infected DMSO 12h Red blood cells
SA408012pos h_iRBC-DMSO_5Plasmodium falciparum infected DMSO 12h Red blood cells
SA408013neg h_iRBC-DMSO_5Plasmodium falciparum infected DMSO 12h Red blood cells
SA408014neg h_iRBC-DMSO_4Plasmodium falciparum infected DMSO 12h Red blood cells
SA408015pos h_iRBC-DMSO_2Plasmodium falciparum infected DMSO 12h Red blood cells
SA408016neg h_iRBC-DMSO_2Plasmodium falciparum infected DMSO 12h Red blood cells
SA408017neg h_iRBC-DMSO_1Plasmodium falciparum infected DMSO 12h Red blood cells
SA408018pos h_iRBC-DMSO_3Plasmodium falciparum infected DMSO 12h Red blood cells
SA408019pos h_iRBC-DMSO_4Plasmodium falciparum infected DMSO 12h Red blood cells
SA408020pos8h_iRBC-DMSO_5Plasmodium falciparum infected DMSO 8h Red blood cells
SA408021pos8h_iRBC-DMSO_4Plasmodium falciparum infected DMSO 8h Red blood cells
SA408022pos8h_iRBC-DMSO_3Plasmodium falciparum infected DMSO 8h Red blood cells
SA408023pos8h_iRBC-DMSO_2Plasmodium falciparum infected DMSO 8h Red blood cells
SA408024neg8h_iRBC-DMSO_4Plasmodium falciparum infected DMSO 8h Red blood cells
SA408025pos8h_iRBC-DMSO_1Plasmodium falciparum infected DMSO 8h Red blood cells
SA408026neg8h_iRBC-DMSO_5Plasmodium falciparum infected DMSO 8h Red blood cells
SA408027neg8h_iRBC-DMSO_3Plasmodium falciparum infected DMSO 8h Red blood cells
SA408028neg8h_iRBC-DMSO_2Plasmodium falciparum infected DMSO 8h Red blood cells
SA408029neg8h_iRBC-DMSO_1Plasmodium falciparum infected DMSO 8h Red blood cells
SA408070negQC09pooled QC pooled QC pooled QC
SA408071posQC12pooled QC pooled QC pooled QC
SA408072negQC04pooled QC pooled QC pooled QC
SA408073negQC11pooled QC pooled QC pooled QC
SA408074negQC12pooled QC pooled QC pooled QC
SA408075negQC08pooled QC pooled QC pooled QC
SA408076negQC07pooled QC pooled QC pooled QC
SA408077negQC06pooled QC pooled QC pooled QC
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Collection:

Collection ID:CO003866
Collection Summary:PfD7-GFP cultures (Plasmodium falciparum) were synchronized as described in DOI: 10.1016/j.ejmech.2015.07.047. Trophozoite stage parasites (approximately 18-20h after invasion, 15% parasitemia, 5% HCT, 2 ml culture per sample) were treated with vehicle (0.35% vol/vol DMSO) or bilirubin (41 µM) for 8 or 12h.
Sample Type:Red blood cells

Treatment:

Treatment ID:TR003882
Treatment Summary:PfD7-GFP cultures (Plasmodium falciparum) were synchronized as described in DOI: 10.1016/j.ejmech.2015.07.047. Trophozoite stage parasites (approximately 18-20h after invasion, 15% parasitemia, 5% HCT, 2 ml culture per sample) were treated with vehicle (0.35% vol/vol DMSO) or bilirubin (41 µM) for 8 or 12h.

Sample Preparation:

Sampleprep ID:SP003879
Sampleprep Summary:The chemicals used were LC-MS grade water, acetonitrile (ACN), methanol (MeOH), and isopropanol (IPA), which were obtained from Th. Geyer (Germany). High-purity methyl tert-butyl ether (MTBE), ammonium formate, formic acid, ammonium acetate, and acetic acid were purchased from Merck (Germany). Stable isotope labelled internal standards for lipidomics (EquiSPLASH; Avanti Polar Lipids, AL, USA) and metabolomics (MSK-A2-1.2; Cambridge Isotope Laboratories, MA, USA) were used at final concentrations of 0.5% and 1.0% (vol/vol), respectively. The culture medium was completely aspirated and the cells washed with 1XPBS (500xg, 5 min). For biphasic extraction of lipids and polar metabolites, samples were initially quenched by incubation on dry ice with 400 μL of 75% (vol/vol) cold methanol for 20 min and the appropriate internal standards (0.5 µL each/sample) were added. After incubation, the samples were vortexed for 5 min at maximum speed, lysed using an ultrasonic bath to sonicate the sample for 5 min and vortexed again briefly after sonication. After addition of 1000 µL of cold MTBE, the monophasic mixture was vortexed for 60 s and incubated at -20°C for 20 min. For phase separation, 250 µL of cold water were added, followed by another vortexing and incubation step (see previous conditions). The biphasic solvent system was then centrifuged for 15 min at 14,000g and 4 °C. For metabolomics analysis, 400 µL of the lower bottom aqueous phase were transferred, dried under a stream of nitrogen, and reconstituted in 75 µL 80% MeOH (v/v). The final samples were vortexed for 10 min, centrifuged (see previous conditions) and the supernatants were transferred to analytical glass vials for LC-MS/MS analysis.

Combined analysis:

Analysis ID AN006142 AN006143
Analysis type MS MS
Chromatography type HILIC HILIC
Chromatography system Thermo Vanquish Thermo Vanquish
Column Waters Atlantis Premier BEH Z-HILIC (100 x 2.1mm, 1.7um) Waters Atlantis Premier BEH Z-HILIC (100 x 2.1mm, 1.7um)
MS Type ESI ESI
MS instrument type Orbitrap Orbitrap
MS instrument name Thermo Orbitrap Exploris 240 Thermo Orbitrap Exploris 240
Ion Mode NEGATIVE POSITIVE
Units Peak intensity (cps) Peak intensity (cps)

Chromatography:

Chromatography ID:CH004665
Chromatography Summary:LC-MS/MS analysis was performed on a Vanquish UHPLC system coupled to an Orbitrap Exploris 240 high-resolution mass spectrometer (Thermo Fisher Scientific, MA, USA) in negative and positive ESI (electrospray ionization) mode. Chromatographic separation was carried out on an Atlantis Premier BEH Z-HILIC column (Waters, MA, USA; 2.1 mm x 100 mm, 1.7 µm) at a flow rate of 0.25 mL/min. The mobile phase consisted of water:acetonitrile (9:1, v/v; mobile phase A) and acetonitrile:water (9:1, v/v; mobile phase B), which were modified with a total buffer concentration of 10 mM ammonium acetate, when analysing in negative mode, and 10 mM ammonium formate, when analysing in positive mode. The aqueous portion of each mobile phase was pH-adjusted (negative mode: pH 9.0 via addition of ammonium hydroxide; positive mode: pH 3.0 via addition of formic acid). The following gradient (20 min total run time including re-equilibration) was applied (time [min]/%B): 0/95, 2/95, 14.5/60, 16/60, 16.5/95, 20/95. Column temperature was maintained at 40 °C, the autosampler was set to 4 °C and sample injection volume was 5 µL.
Instrument Name:Thermo Vanquish
Column Name:Waters Atlantis Premier BEH Z-HILIC (100 x 2.1mm, 1.7um)
Column Temperature:40
Flow Gradient:time [min]/%B: 0/95, 2/95, 14.5/60, 16/60, 16.5/95, 20/95
Flow Rate:0.25mL/min
Solvent A:90% water/10% acetonitrile; 10mM ammonium acetate
Solvent B:90% acetonitrile/10% water; 10mM ammonium acetate
Chromatography Type:HILIC
  
Chromatography ID:CH004666
Chromatography Summary:LC-MS/MS analysis was performed on a Vanquish UHPLC system coupled to an Orbitrap Exploris 240 high-resolution mass spectrometer (Thermo Fisher Scientific, MA, USA) in negative and positive ESI (electrospray ionization) mode. Chromatographic separation was carried out on an Atlantis Premier BEH Z-HILIC column (Waters, MA, USA; 2.1 mm x 100 mm, 1.7 µm) at a flow rate of 0.25 mL/min. The mobile phase consisted of water:acetonitrile (9:1, v/v; mobile phase A) and acetonitrile:water (9:1, v/v; mobile phase B), which were modified with a total buffer concentration of 10 mM ammonium acetate, when analysing in negative mode, and 10 mM ammonium formate, when analysing in positive mode. The aqueous portion of each mobile phase was pH-adjusted (negative mode: pH 9.0 via addition of ammonium hydroxide; positive mode: pH 3.0 via addition of formic acid). The following gradient (20 min total run time including re-equilibration) was applied (time [min]/%B): 0/95, 2/95, 14.5/60, 16/60, 16.5/95, 20/95. Column temperature was maintained at 40 °C, the autosampler was set to 4 °C and sample injection volume was 5 µL.
Instrument Name:Thermo Vanquish
Column Name:Waters Atlantis Premier BEH Z-HILIC (100 x 2.1mm, 1.7um)
Column Temperature:40
Flow Gradient:time [min]/%B: 0/95, 2/95, 14.5/60, 16/60, 16.5/95, 20/95
Flow Rate:0.25mL/min
Solvent A:90% water/10% acetonitrile; 10 mM ammonium formate pH3
Solvent B:90% acetonitrile/10% water; 10 mM ammonium formate pH3
Chromatography Type:HILIC

MS:

MS ID:MS005848
Analysis ID:AN006142
Instrument Name:Thermo Orbitrap Exploris 240
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:Analytes were recorded via a full scan with a mass resolving power of 120,000 over a mass range from 60 – 900 m/z (scan time: 100 ms, RF lens: 70%). To obtain MS/MS fragment spectra, data dependent acquisition was carried out (resolving power: 15,000; scan time: 22 ms; stepped collision energies [%]: 30/50/70; cycle time: 900 ms). Ion source parameters were set to the following values: spray voltage: -3500 V (negative mode), sheath gas: 30 psi, auxiliary gas: 5 psi, sweep gas: 0 psi, ion transfer tube temperature: 350 °C, vaporizer temperature: 300 °C.
Ion Mode:NEGATIVE
  
MS ID:MS005849
Analysis ID:AN006143
Instrument Name:Thermo Orbitrap Exploris 240
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:Analytes were recorded via a full scan with a mass resolving power of 120,000 over a mass range from 60 – 900 m/z (scan time: 100 ms, RF lens: 70%). To obtain MS/MS fragment spectra, data dependent acquisition was carried out (resolving power: 15,000; scan time: 22 ms; stepped collision energies [%]: 30/50/70; cycle time: 900 ms). Ion source parameters were set to the following values: spray voltage: 4100 V (positive mode), sheath gas: 30 psi, auxiliary gas: 5 psi, sweep gas: 0 psi, ion transfer tube temperature: 350 °C, vaporizer temperature: 300 °C.
Ion Mode:POSITIVE
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