Metabolomics Structure Database

 
MW REGNO: 27999
Common Name:Isopentenyl-diphosphate
Systematic Name:3-methylbut-3-enyl pyrophosphate
RefMet Name:Isopentenyl-diphosphate
Synonyms: [PubChem Synonyms]
Exact Mass:
246.0058 (neutral)    Calculate m/z:
Formula:C5H12O7P2
InChIKey:NUHSROFQTUXZQQ-UHFFFAOYSA-N
LIPID MAPS Category:Prenol Lipids [PR]
LIPID MAPS mainclass:Isoprenoids [PR01]
LIPID MAPS subclass:C5 isoprenoids (hemiterpenes) [PR0101]
SMILES:C=C(C)CCOP(=O)(O)OP(=O)(O)O
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:1195
LIPID MAPS ID:LMPR01010008
CHEBI ID:16584
HMDB ID:HMDB0001347
KEGG ID:C00129
Chemspider ID:1158
METLIN ID:6181
MetaCyc ID:DELTA3-ISOPENTENYL-PP
Plant Metabolite Hub(Pmhub):MS000000930

Calculated physicochemical properties (?):

Heavy Atoms: 14  
Rings: 0  
Aromatic Rings: 0  
Rotatable Bonds: 6  
van der Waals Molecular volume: 193.61 Å3 molecule-1  
Toplogical Polar Sufrace Area: 113.29 Å2 molecule-1  
Hydrogen Bond Donors: 3  
Hydrogen Bond Acceptors: 7  
logP: 1.98  
Molar Refractivity: 48.42  
Fraction sp3 Carbons: 0.60  
sp3 Carbons: 3  

Human Pathway links:

HMDB and KEGG pathways containing this metabolite

REACTOME pathways containing this metabolite

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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