Metabolomics Structure Database

 
MW REGNO: 28252
Common Name:(+) Germacrene A
Systematic Name:(1E,5E,8R)-1,5-dimethyl-8-prop-1-en-2-ylcyclodeca-1,5-diene
RefMet Name:Germacrene A
Synonyms: [PubChem Synonyms]
Exact Mass:
204.1878 (neutral)    Calculate m/z:
Formula:C15H24
InChIKey:XMRKUJJDDKYUHV-DFSVIBJJSA-N
LIPID MAPS Category:Prenol Lipids [PR]
LIPID MAPS mainclass:Isoprenoids [PR01]
LIPID MAPS subclass:C15 isoprenoids (sesquiterpenes) [PR0103]
LIPID MAPS level4class:Germacrane sesquiterpenoids [LMPR010309]
SMILES:C=C(C)[C@@H]1CC/C(=C/CC/C(=C/C1)/C)/C
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:9548705
LIPID MAPS ID:LMPR0103090001
CHEBI ID:41595
HMDB ID:HMDB0302790
MetaCyc ID:CPD-9006

Calculated physicochemical properties (?):

Heavy Atoms: 15  
Rings: 1  
Aromatic Rings: 0  
Rotatable Bonds: 1  
van der Waals Molecular volume: 247.78 Å3 molecule-1  
Toplogical Polar Sufrace Area: 0.00 Å2 molecule-1  
Hydrogen Bond Donors: 0  
Hydrogen Bond Acceptors: 0  
logP: 5.04  
Molar Refractivity: 68.90  
Fraction sp3 Carbons: 0.60  
sp3 Carbons: 9  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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