Metabolomics Structure Database

MDLMOL SDF CSV TSV

MW REGNO:	2827
Common Name:	(+/-) 5-iPF2alpha-VI
Systematic Name:	5,9S,11R-trihydroxy-6E,14Z-prostadienoic acid-cyclo[8S,12R]
RefMet Name:	5-iPF2alpha-VI
Synonyms:	Isoprostane F2alpha-I; iPF2alpha-I; 5-iso-PGF2a VI [PubChem Synonyms]
Exact Mass:	354.2406 (neutral)    Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M-H+2K]+ [M+Na]+ [M+2Na]2+ [M-H+2Na]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M-H]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+HCOO]- M(neutral)
Formula:	C20H34O5
InChIKey:	RZCPXIZGLPAGEV-SUHLLOIRSA-N
LIPID MAPS Category:	Fatty Acyls [FA]
LIPID MAPS mainclass:	Eicosanoids [FA03]
LIPID MAPS subclass:	Isoprostanes [FA0311]
SMILES:	CCCCC/C=CC[C@@H]1[C@H](/C=C/C(CCCC(=O)O)O)[C@H](C[C@H]1O)O
Studies:	Available studies (via RefMet name)

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All Database Links Calculated Properties Human Pathways

External database links:

PubChem CID:	42607309
LIPID MAPS ID:	LMFA03110011
CHEBI ID:	140933
HMDB ID:	HMDB0243554

Calculated physicochemical properties (?):

Heavy Atoms:	25
Rings:	1
Aromatic Rings:	0
Rotatable Bonds:	12
van der Waals Molecular volume:	378.23 Å3 molecule-1
Toplogical Polar Sufrace Area:	97.99 Å2 molecule-1
Hydrogen Bond Donors:	4
Hydrogen Bond Acceptors:	5
logP:	3.90
Molar Refractivity:	99.68
Fraction sp3 Carbons:	0.75
sp3 Carbons:	15

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y