Metabolomics Structure Database

MDLMOL SDF CSV TSV

MW REGNO:	30493
Common Name:	Sphingosine-1-phosphocholine
Systematic Name:	Sphing-4-enine-1-phosphocholine
RefMet Name:	Sphingosine-1-phosphocholine
Synonyms:	SM(d18:1/0:0) [PubChem Synonyms]
Exact Mass:	464.3379 (neutral)    Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M-H+2K]+ [M+Na]+ [M+2Na]2+ [M-H+2Na]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M-H]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+HCOO]- M(neutral)
Formula:	C23H49N2O5P
InChIKey:	JLVSPVFPBBFMBE-HXSWCURESA-N
LIPID MAPS Category:	Sphingolipids [SP]
LIPID MAPS mainclass:	Sphingoid bases [SP01]
LIPID MAPS subclass:	Lysosphingomyelins and lysoglycosphingolipids [SP0106]
SMILES:	CCCCCCCCCCCCC/C=C/[C@H]([C@H](COP(=O)([O-])OCC[N+](C)(C)C)N)O
Studies:	Available studies (via RefMet name)

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All Database Links Calculated Properties Human Pathways

External database links:

PubChem CID:	9847290
LIPID MAPS ID:	LMSP01060001
CHEBI ID:	17689
HMDB ID:	HMDB0006482
KEGG ID:	C03640
Plant Metabolite Hub(Pmhub):	MS000018014

Calculated physicochemical properties (?):

Heavy Atoms:	31
Rings:	0
Aromatic Rings:	0
Rotatable Bonds:	21
van der Waals Molecular volume:	489.60 Å3 molecule-1
Toplogical Polar Sufrace Area:	104.84 Å2 molecule-1
Hydrogen Bond Donors:	2
Hydrogen Bond Acceptors:	6
logP:	5.57
Molar Refractivity:	129.10
Fraction sp3 Carbons:	0.91
sp3 Carbons:	21

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y