Metabolomics Structure Database

 
MW REGNO: 30653
Common Name:Cer(d18:0/16:0)
Systematic Name:N-(hexadecanoyl)-sphinganine
RefMet Name:Cer 18:0;O2/16:0
Synonyms:C16DH Cer; N-(hexadecanoyl)-dihydroceramide; N-(palmitoyl)-dihydroceramide [PubChem Synonyms]
Exact Mass:
539.5277 (neutral)    Calculate m/z:
Formula:C34H69NO3
InChIKey:GCGTXOVNNFGTPQ-JHOUSYSJSA-N
LIPID MAPS Category:Sphingolipids [SP]
LIPID MAPS mainclass:Ceramides [SP02]
LIPID MAPS subclass:N-acylsphinganines (dihydroceramides) [SP0202]
Massbank MS spectra:View MS spectra
SMILES:CCCCCCCCCCCCCCC[C@H]([C@H](CO)NC(=O)CCCCCCCCCCCCCCC)O
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:5283572
LIPID MAPS ID:LMSP02020001
CHEBI ID:67042
HMDB ID:HMDB0011760
Chemspider ID:4446685

Calculated physicochemical properties (?):

Heavy Atoms: 38  
Rings: 0  
Aromatic Rings: 0  
Rotatable Bonds: 31  
van der Waals Molecular volume: 631.49 Å3 molecule-1  
Toplogical Polar Sufrace Area: 69.56 Å2 molecule-1  
Hydrogen Bond Donors: 3  
Hydrogen Bond Acceptors: 3  
logP: 10.64  
Molar Refractivity: 167.16  
Fraction sp3 Carbons: 0.97  
sp3 Carbons: 33  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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