Metabolomics Structure Database
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| MW REGNO: | 50714 |
| Common Name: | 5-hydroxymethyldeoxycytidylic acid |
| Systematic Name: | 2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) |
| Synonyms: | 5-Hmdcyt [PubChem Synonyms] |
| Exact Mass: | |
| Formula: | C10H16N3O8P |
| InChIKey: | BTIWPBKNTZFNRI-XLPZGREQSA-N |
| ClassyFire superclass: | Nucleosides, nucleotides, and analogues [C0000289] |
| ClassyFire class: | Pyrimidine nucleotides [C0001509] |
| ClassyFire subclass: | Pyrimidine deoxyribonucleotides [C0002148] |
| ClassyFire direct parent: | Pyrimidine 2'-deoxyribonucleoside monophosphates [C0002158] |
| SMILES: | C1[C@@H]([C@@H](COP(=O)(O)O)O[C@H]1n1cc(CO)c(N)nc1=O)O |
| Studies: | Available studies(via PubChem CID) |
Select appropriate tab below to view additional details:
External database links:
| PubChem CID: | 440189 |
| CHEBI ID: | 16952 |
Calculated physicochemical properties (?):
| Heavy Atoms: | 22 |
| Rings: | 2 |
| Aromatic Rings: | 1 |
| Rotatable Bonds: | 5 |
| van der Waals Molecular volume: | 261.17 Å3 molecule-1 |
| Toplogical Polar Sufrace Area: | 179.43 Å2 molecule-1 |
| Hydrogen Bond Donors: | 5 |
| Hydrogen Bond Acceptors: | 10 |
| logP: | 0.17 |
| Molar Refractivity: | 72.71 |
| Fraction sp3 Carbons: | 0.60 |
| sp3 Carbons: | 6 |
References
LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200 ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y
