Metabolomics Structure Database

 
MW REGNO: 68846
Common Name:Clitidine 5'-phosphate
Systematic Name:1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)tetrahydrofuran-2-yl]-4-imino-pyridine-3-carboxylic acid
RefMet Name:Clitidine 5'-phosphate
Synonyms:AC1L9BAA; C08429 [PubChem Synonyms]
Exact Mass:
350.0515 (neutral)    Calculate m/z:
Formula:C11H15N2O9P
InChIKey:LLSDPYFONVWVGW-ZYUZMQFOSA-N
ClassyFire superclass:Organic oxygen compounds [C0004603]
ClassyFire class:Organooxygen compounds [C0000323]
ClassyFire subclass:Carbohydrates and carbohydrate conjugates [C0000011]
ClassyFire direct parent:Pentose phosphates [C0002259]
SMILES:c1cn(cc(c1=N)C(=O)O)[C@H]1[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O1)O)O
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:441538
CHEBI ID:3747
KEGG ID:C08429
Plant Metabolite Hub(Pmhub):MS000019911

Calculated physicochemical properties (?):

Heavy Atoms: 23  
Rings: 2  
Aromatic Rings: 1  
Rotatable Bonds: 5  
van der Waals Molecular volume: 273.62 Å3 molecule-1  
Toplogical Polar Sufrace Area: 184.60 Å2 molecule-1  
Hydrogen Bond Donors: 6  
Hydrogen Bond Acceptors: 10  
logP: 0.78  
Molar Refractivity: 73.03  
Fraction sp3 Carbons: 0.45  
sp3 Carbons: 5  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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