Metabolomics Structure Database

MDLMOL SDF CSV TSV

MW REGNO:	52952
Common Name:	Amarogentin
Systematic Name:	(4aR)-5t-ethenyl-6c-[O(2)-(3,5,3'-trihydroxybiphenyl-2-ylcarbonyl)-beta-D-glucopyranosyloxy]-4,4ar,5,6-tetrahydro-3H-pyrano[3,4-c]pyran-1-one
Synonyms:	(4aS,5R,6S)-5-ethenyl-1-oxo-4,4a,5,6-tetrahydro-1H,3H-pyrano[3,4-c]pyran-6-yl- 2-O-[(3,3',5-trihydroxybiphenyl-2-yl)carbonyl]-beta-D-glucopyranoside; Amarogentin; sweroside-2'-(3'',5'',3'''-trihydroxydiphenyl)-2''-carboxylic acid ester [PubChem Synonyms]
Exact Mass:	586.1686 (neutral)    Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M-H+2K]+ [M+Na]+ [M+2Na]2+ [M-H+2Na]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M-H]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+HCOO]- M(neutral)
Formula:	C29H30O13
InChIKey:	DBOVHQOUSDWAPQ-WTONXPSSSA-N
ClassyFire superclass:	Benzenoids [C0002448]
ClassyFire class:	Benzene and substituted derivatives [C0002279]
ClassyFire subclass:	Biphenyls and derivatives [C0000041]
ClassyFire direct parent:	Biphenyls and derivatives [C0000041]
SMILES:	C=C[C@@H]1[C@@H]2CCOC(=O)C2=CO[C@H]1O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](CO)O1)O)O)OC(=O)c1c(cc(cc1O)O)c1cccc(c1)O
Studies:	-

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Calculated physicochemical properties (?):

Heavy Atoms:	42
Rings:	5
Aromatic Rings:	2
Rotatable Bonds:	8
van der Waals Molecular volume:	514.53 Å3 molecule-1
Toplogical Polar Sufrace Area:	207.88 Å2 molecule-1
Hydrogen Bond Donors:	6
Hydrogen Bond Acceptors:	13
logP:	3.34
Molar Refractivity:	144.68
Fraction sp3 Carbons:	0.38
sp3 Carbons:	11

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y