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ST001472 Metabolomics of lung injury after allogeneic hematopoietic cell transplantation - Small Intestines ICMSList of human metabolic pathways and metabolites (REACTOME)
Pathway name (# of metabolites detected in study)
Reactome pathway
5-Phosphoribose 1-diphosphate biosynthesis (2)
REACT_850
Abacavir metabolism (5)
REACT_121388
ABH2 mediated Reversal of Alkylation Damage (2)
REACT_526
ABH3 mediated Reversal of Alkylation Damage (2)
REACT_1662
Abnormal conversion of 2-oxoglutarate to 2-hydroxyglutarate (2)
REACT_160183
Abnormal metabolism in phenylketonuria (3)
REACT_121117
Acetylcholine regulates insulin secretion (1)
REACT_18405
Activation of AMPA receptors (1)
REACT_18338
Activation of Ca-permeable Kainate Receptor (1)
REACT_21346
Activation of Na-permeable Kainate Receptors (1)
REACT_21343
Activation of PPARGC1A (PGC-1alpha) by phosphorylation (1)
REACT_200686
Activation of Rac (1)
REACT_19226
Activation of RAS in B cells (1)
REACT_118778
Activation of the phototransduction cascade (2)
REACT_163932
Adenylate cyclase activating pathway (1)
REACT_15312
Adenylate cyclase inhibitory pathway (1)
REACT_15333
ADP signalling through P2Y purinoceptor 1 (1)
REACT_19140
ADP signalling through P2Y purinoceptor 12 (1)
REACT_20653
Adrenaline,noradrenaline inhibits insulin secretion (1)
REACT_18339
Aflatoxin activation and detoxification (3)
REACT_228214
alpha-linolenic acid (ALA) metabolism (3)
REACT_121147
Alpha-oxidation of phytanate (4)
REACT_17003
Amino acid synthesis and interconversion (transamination) (8)
REACT_238
Amino acid transport across the plasma membrane (2)
REACT_13796
AMPK inhibits chREBP transcriptional activation activity (1)
REACT_1988
Androgen biosynthesis (2)
REACT_11059
Antigen Presentation: Folding, assembly and peptide loading of class I MHC (3)
REACT_75795
Antigen processing: Ubiquitination & Proteasome degradation (3)
REACT_75842
ARMS-mediated activation (1)
REACT_12002
Aromatic amines can be N-hydroxylated or N-dealkylated by CYP1A2 (1)
REACT_13721
Astrocytic Glutamate-Glutamine Uptake And Metabolism (1)
REACT_13639
A tetrasaccharide linker sequence is required for GAG synthesis (1)
REACT_121408
Axonal growth inhibition (RHOA activation) (1)
REACT_13815
Axonal growth stimulation (1)
REACT_13779
Beta oxidation of butanoyl-CoA to acetyl-CoA (1)
REACT_419
Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA (1)
REACT_1708
Beta oxidation of hexanoyl-CoA to butanoyl-CoA (1)
REACT_1887
Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA (1)
REACT_735
Beta oxidation of myristoyl-CoA to lauroyl-CoA (1)
REACT_2108
Beta oxidation of octanoyl-CoA to hexanoyl-CoA (1)
REACT_1697
Beta oxidation of palmitoyl-CoA to myristoyl-CoA (1)
REACT_2025
Beta-oxidation of pristanoyl-CoA (1)
REACT_17017
Beta-oxidation of very long chain fatty acids (1)
REACT_17062
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein (4)
REACT_22433
Biotin transport and metabolism (1)
REACT_11153
Branched-chain amino acid catabolism (3)
REACT_197
Ca2+ pathway (2)
REACT_172761
Cam-PDE 1 activation (1)
REACT_15408
Carnitine synthesis (3)
REACT_2125
CD28 dependent Vav1 pathway (1)
REACT_19238
Cell redox homeostasis (2)
REACT_121394
cGMP effects (1)
REACT_23767
Cholesterol biosynthesis (2)
REACT_9405
Chondroitin sulfate biosynthesis (2)
REACT_120989
Citric acid cycle (TCA cycle) (8)
REACT_1785
Class A/1 (Rhodopsin-like receptors) (3)
REACT_14828
Class C/3 (Metabotropic glutamate/pheromone receptors) (1)
REACT_18319
Clathrin derived vesicle budding (1)
REACT_19187
Cobalamin (Cbl, vitamin B12) transport and metabolism (3)
REACT_163862
Coenzyme A biosynthesis (2)
REACT_11218
Collagen biosynthesis and modifying enzymes (3)
REACT_121139
Condensation of Prophase Chromosomes (2)
REACT_172744
Conjugation of benzoate with glycine (1)
REACT_6933
Conjugation of phenylacetate with glutamine (1)
REACT_6800
Conjugation of salicylate with glycine (1)
REACT_6812
COPII (Coat Protein 2) Mediated Vesicle Transport (1)
REACT_12507
COPI Mediated Transport (1)
REACT_11096
Creatine metabolism (1)
REACT_813
CREB phosphorylation through the activation of CaMKII (1)
REACT_20642
Cross-presentation of particulate exogenous antigens (phagosomes) (1)
REACT_111174
Cross-presentation of soluble exogenous antigens (endosomes) (2)
REACT_111056
CYP2E1 reactions (1)
REACT_13797
Cysteine formation from homocysteine (2)
REACT_115589
Cytosolic iron-sulfur cluster assembly (2)
REACT_160176
Cytosolic sulfonation of small molecules (1)
REACT_6913
Cytosolic tRNA aminoacylation (3)
REACT_15306
DAP12 signaling (1)
REACT_147814
DARPP-32 events (1)
REACT_15334
DCC mediated attractive signaling (1)
REACT_22351
Deadenylation of mRNA (1)
REACT_20514
Defective CHSY1 causes TPBS (1)
REACT_267682
Defective MMACHC causes methylmalonic aciduria and homocystinuria type cblC (1)
REACT_169169
Defective MTR causes methylmalonic aciduria and homocystinuria type cblG (1)
REACT_169149
Defective MTRR causes methylmalonic aciduria and homocystinuria type cblE (2)
REACT_169439
Degradation of cysteine and homocysteine (5)
REACT_115654
Degradation of GABA (5)
REACT_23964
Detoxification of Reactive Oxygen Species (2)
REACT_172715
Downstream signal transduction (1)
REACT_17025
EGFR Transactivation by Gastrin (1)
REACT_121096
Eicosanoids (1)
REACT_13645
Electron transport from NADPH to Ferredoxin (1)
REACT_150128
Endogenous sterols (1)
REACT_13812
Endosomal/Vacuolar pathway (2)
REACT_111168
eNOS activation (2)
REACT_12477
EPHA-mediated growth cone collapse (1)
REACT_228063
EPHB-mediated forward signaling (2)
REACT_228085
EPH-ephrin mediated repulsion of cells (1)
REACT_228189
Ephrin signaling (1)
REACT_228226
ER-Phagosome pathway (2)
REACT_111178
Estrogen biosynthesis (1)
REACT_11037
Ethanol oxidation (2)
REACT_34
Eukaryotic Translation Elongation (1)
REACT_1477
Eukaryotic Translation Termination (1)
REACT_1986
Factors involved in megakaryocyte development and platelet production (2)
REACT_24970
Fatty acids (1)
REACT_13814
Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion (1)
REACT_19193
Fatty acid, triacylglycerol, and ketone body metabolism (1)
REACT_22279
Fatty Acyl-CoA Biosynthesis (3)
REACT_1319
FCERI mediated MAPK activation (1)
REACT_163701
FCERI mediated NF-kB activation (1)
REACT_163994
FMO oxidises nucleophiles (1)
REACT_13653
Formation of the active cofactor, UDP-glucuronate (1)
REACT_6737
Frs2-mediated activation (1)
REACT_12076
FRS2-mediated cascade (1)
REACT_21247
Fructose catabolism (1)
REACT_1571
GABA synthesis (2)
REACT_24020
Galactose catabolism (1)
REACT_532
G alpha (12/13) signalling events (1)
REACT_18407
G alpha (i) signalling events (6)
REACT_19231
G alpha (q) signalling events (3)
REACT_18283
G alpha (s) signalling events (2)
REACT_19327
G alpha (z) signalling events (1)
REACT_19333
Gap junction assembly (1)
REACT_9509
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion (1)
REACT_18274
Glucagon signaling in metabolic regulation (1)
REACT_1665
Glucagon-type ligand receptors (1)
REACT_18377
Glucocorticoid biosynthesis (2)
REACT_11036
Gluconeogenesis (10)
REACT_1520
Glucuronidation (1)
REACT_6784
Glutamate Neurotransmitter Release Cycle (1)
REACT_12591
Glutathione conjugation (1)
REACT_6926
Glutathione synthesis and recycling (3)
REACT_6960
Glycogen breakdown (glycogenolysis) (1)
REACT_1008
Glycogen synthesis (2)
REACT_169208
Glycolysis (4)
REACT_1383
Glycosphingolipid metabolism (2)
REACT_116105
Glyoxylate metabolism (4)
REACT_16925
Golgi Associated Vesicle Biogenesis (1)
REACT_19400
G-protein activation (1)
REACT_15457
GPVI-mediated activation cascade (1)
REACT_1695
GRB2 events in EGFR signaling (1)
REACT_12606
GRB2 events in ERBB2 signaling (1)
REACT_115854
GTP hydrolysis and joining of the 60S ribosomal subunit (1)
REACT_2085
HDMs demethylate histones (2)
REACT_228178
Hedgehog 'off' state (1)
REACT_267634
Heme degradation (2)
REACT_22297
Histidine catabolism (2)
REACT_1249
HS-GAG biosynthesis (2)
REACT_121248
HS-GAG degradation (1)
REACT_120752
Hydrolysis of LPC (1)
REACT_120977
Hydrolysis of LPE (1)
REACT_120785
Hydroxycarboxylic acid-binding receptors (2)
REACT_163785
Hypusine synthesis from eIF5A-lysine (1)
REACT_12469
Inactivation of Cdc42 and Rac (1)
REACT_19342
Inactivation, recovery and regulation of the phototransduction cascade (1)
REACT_163919
Insulin effects increased synthesis of Xylulose-5-Phosphate (1)
REACT_939
Integrin alphaIIb beta3 signaling (1)
REACT_15523
Interconversion of 2-oxoglutarate and 2-hydroxyglutarate (1)
REACT_25367
Interleukin receptor SHC signaling (1)
REACT_23891
Iron uptake and transport (1)
REACT_25060
ISG15 antiviral mechanism (1)
REACT_115831
Keratan sulfate biosynthesis (3)
REACT_121120
Kinesins (1)
REACT_25201
Linoleic acid (LA) metabolism (3)
REACT_121100
Lysine catabolism (4)
REACT_1298
Lysosome Vesicle Biogenesis (1)
REACT_19287
Metabolism of folate and pterines (2)
REACT_11167
Metabolism of nucleotides (5)
REACT_1698
Metabolism of serotonin (1)
REACT_15532
Methionine salvage pathway (1)
REACT_75881
Methylation (2)
REACT_6946
MHC class II antigen presentation (1)
REACT_121399
MicroRNA (miRNA) biogenesis (1)
REACT_12417
Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane (1)
REACT_11039
Mineralocorticoid biosynthesis (2)
REACT_11047
Miscellaneous substrates (1)
REACT_13425
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) (1)
REACT_228019
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) (1)
REACT_228145
mitochondrial fatty acid beta-oxidation of unsaturated fatty acids (1)
REACT_160
Mitochondrial iron-sulfur cluster biogenesis (1)
REACT_150353
Mitochondrial translation elongation (1)
REACT_267677
Mitochondrial translation initiation (1)
REACT_267680
Mitochondrial translation termination (1)
REACT_267602
Mitochondrial tRNA aminoacylation (3)
REACT_15302
Mitotic Prometaphase (1)
REACT_682
Molybdenum cofactor biosynthesis (2)
REACT_25073
mRNA Capping (2)
REACT_1470
mRNA decay by 3' to 5' exoribonuclease (4)
REACT_20619
mRNA decay by 5' to 3' exoribonuclease (4)
REACT_20518
Mtb iron assimilation by chelation (1)
REACT_121118
mTOR signalling (1)
REACT_6838
Na+/Cl- dependent neurotransmitter transporters (1)
REACT_20506
NADPH regeneration (2)
REACT_16904
NCAM signaling for neurite out-growth (1)
REACT_18334
NEP/NS2 Interacts with the Cellular Export Machinery (1)
REACT_6179
N-glycan trimming and elongation in the cis-Golgi (1)
REACT_25210
Nicotinamide salvaging (1)
REACT_11213
Nicotinate metabolism (3)
REACT_11088
Nitric oxide stimulates guanylate cyclase (1)
REACT_23862
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (1)
REACT_75822
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) (1)
REACT_75768
NOSIP mediated eNOS trafficking (1)
REACT_12510
NOSTRIN mediated eNOS trafficking (1)
REACT_12541
NRAGE signals death through JNK (1)
REACT_13638
Nuclear import of Rev protein (1)
REACT_9395
O-linked glycosylation of mucins (2)
REACT_115606
Organic anion transport (2)
REACT_22310
Organic anion transporters (4)
REACT_19372
Orphan transporters (1)
REACT_267716
Oxidative Stress Induced Senescence (2)
REACT_169436
Oxygen-dependent asparagine hydroxylation of Hypoxia-inducible Factor Alpha (2)
REACT_121226
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha (2)
REACT_120916
P2Y receptors (1)
REACT_18289
p38MAPK events (1)
REACT_12065
PDE3B signalling (1)
REACT_1451
Pentose phosphate pathway (hexose monophosphate shunt) (2)
REACT_1859
Peptide chain elongation (1)
REACT_1404
Phagosomal maturation (early endosomal stage) (2)
REACT_121256
Phenylalanine and tyrosine catabolism (5)
REACT_1786
Phosphate bond hydrolysis by NUDT proteins (2)
REACT_150237
Plasmalogen biosynthesis (1)
REACT_1407
Platelet degranulation (1)
REACT_318
PLC beta mediated events (1)
REACT_15426
Pregnenolone biosynthesis (1)
REACT_11038
Pre-NOTCH Processing in Golgi (2)
REACT_118798
Pre-NOTCH Processing in the Endoplasmic Reticulum (2)
REACT_118722
Presynaptic function of Kainate receptors (1)
REACT_21254
Proline catabolism (2)
REACT_1002
Prostacyclin signalling through prostacyclin receptor (1)
REACT_23946
Proton-coupled monocarboxylate transport (2)
REACT_20515
Proton/oligonucleotide cotransporters (2)
REACT_19328
Purine catabolism (6)
REACT_2086
Purine ribonucleoside monophosphate biosynthesis (10)
REACT_1776
Purine salvage (6)
REACT_1923
Pyrimidine biosynthesis (8)
REACT_21376
Pyrimidine catabolism (8)
REACT_1023
Pyrimidine salvage reactions (5)
REACT_655
Pyruvate metabolism (3)
REACT_2071
Rap1 signalling (1)
REACT_23898
Ras activation uopn Ca2+ infux through NMDA receptor (2)
REACT_20546
Reactions specific to the complex N-glycan synthesis pathway (1)
REACT_25302
Recruitment of NuMA to mitotic centrosomes (1)
REACT_15510
Recycling of bile acids and salts (2)
REACT_11042
Recycling of eIF2:GDP (1)
REACT_1815
Recycling pathway of L1 (1)
REACT_22365
Regulation by TREX1 (1)
REACT_163652
Regulation of actin dynamics for phagocytic cup formation (1)
REACT_160086
Regulation of AMPK activity via LKB1 (1)
REACT_21285
Regulation of Glucokinase by Glucokinase Regulatory Protein (1)
REACT_6804
Regulation of ornithine decarboxylase (ODC) (1)
REACT_13565
Regulation of pyruvate dehydrogenase (PDH) complex (2)
REACT_12528
Regulation of Rheb GTPase activity by AMPK (2)
REACT_21393
Regulation of thyroid hormone activity (1)
REACT_15297
Removal of the Flap Intermediate (4)
REACT_70
Removal of the Flap Intermediate from the C-strand (4)
REACT_7999
Resolution of Sister Chromatid Cohesion (1)
REACT_150425
Respiratory electron transport (3)
REACT_22393
Retinoid cycle disease events (1)
REACT_160130
Retinoid metabolism and transport (1)
REACT_24968
Retrograde neurotrophin signalling (1)
REACT_12435
Rev-mediated nuclear export of HIV RNA (1)
REACT_6190
Rho GTPase cycle (1)
REACT_11051
Scavenging by Class A Receptors (2)
REACT_163699
SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion (1)
REACT_19279
Sema4D induced cell migration and growth-cone collapse (1)
REACT_19277
Sema4D mediated inhibition of cell attachment and migration (1)
REACT_19266
Separation of Sister Chromatids (1)
REACT_150471
Serine biosynthesis (4)
REACT_115789
SHC1 events in EGFR signaling (1)
REACT_12579
SHC1 events in ERBB2 signaling (1)
REACT_115993
SHC1 events in ERBB4 signaling (1)
REACT_116005
SHC-mediated cascade (1)
REACT_21374
SHC-mediated signalling (1)
REACT_661
Sialic acid metabolism (3)
REACT_200874
Signaling by constitutively active EGFR (1)
REACT_115852
Signaling by FGFR mutants (1)
REACT_121398
Signaling by SCF-KIT (1)
REACT_111040
Signalling to p38 via RIT and RIN (1)
REACT_12077
Signalling to RAS (1)
REACT_12033
Signal transduction by L1 (1)
REACT_22272
Sodium-coupled sulphate, di- and tri-carboxylate transporters (2)
REACT_20646
SOS-mediated signalling (1)
REACT_524
Sphingolipid de novo biosynthesis (2)
REACT_115810
Sterols are 12-hydroxylated by CYP8B1 (1)
REACT_13438
Stimuli-sensing channels (1)
REACT_160189
Sulfide oxidation to sulfate (2)
REACT_116010
Sulfur amino acid metabolism (2)
REACT_115639
SUMO is conjugated to E1 (UBA2:SAE1) (1)
REACT_163812
Synthesis and interconversion of nucleotide di- and triphosphates (13)
REACT_21330
Synthesis of 12-eicosatetraenoic acid derivatives (1)
REACT_150201
Synthesis of 15-eicosatetraenoic acid derivatives (3)
REACT_150422
Synthesis of (16-20)-hydroxyeicosatetraenoic acids (HETE) (1)
REACT_150134
Synthesis of 5-eicosatetraenoic acids (2)
REACT_150209
Synthesis of bile acids and bile salts (1)
REACT_11054
Synthesis of bile acids and bile salts via 24-hydroxycholesterol (3)
REACT_11053
Synthesis of bile acids and bile salts via 27-hydroxycholesterol (2)
REACT_11048
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol (4)
REACT_11041
Synthesis of CL (1)
REACT_120920
Synthesis of Dolichyl-phosphate (2)
REACT_22230
Synthesis of dolichyl-phosphate mannose (1)
REACT_2032
Synthesis of epoxy (EET) and dihydroxyeicosatrienoic acids (DHET) (1)
REACT_150417
Synthesis of GDP-mannose (1)
REACT_22423
Synthesis of glycosylphosphatidylinositol (GPI) (1)
REACT_952
Synthesis of IP2, IP, and Ins in the cytosol (1)
REACT_150352
Synthesis of Ketone Bodies (1)
REACT_1464
Synthesis of Leukotrienes (LT) and Eoxins (EX) (3)
REACT_150420
Synthesis of Lipoxins (LX) (2)
REACT_150320
Synthesis of PA (2)
REACT_120906
Synthesis of PC (1)
REACT_121238
Synthesis of PE (2)
REACT_120919
Synthesis of PG (2)
REACT_121280
Synthesis of PI (1)
REACT_121000
Synthesis of Prostaglandins (PG) and Thromboxanes (TX) (3)
REACT_150149
Synthesis of UDP-N-acetyl-glucosamine (2)
REACT_22394
Synthesis of very long-chain fatty acyl-CoAs (2)
REACT_380
Termination of O-glycan biosynthesis (1)
REACT_115835
TET1,2,3 and TDG demethylate DNA (2)
REACT_200682
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation (2)
REACT_111176
The activation of arylsulfatases (1)
REACT_121036
The canonical retinoid cycle in rods (twilight vision) (2)
REACT_160156
The proton buffering model (1)
REACT_6196
The retinoid cycle in cones (daylight vision) (1)
REACT_160083
Thrombin signalling through proteinase activated receptors (PARs) (1)
REACT_21384
Thromboxane signalling through TP receptor (1)
REACT_20647
Thyroxine biosynthesis (2)
REACT_15292
Tie2 Signaling (1)
REACT_12621
Tolerance by Mtb to nitric oxide produced by macrophages (1)
REACT_120983
Translocation of GLUT4 to the plasma membrane (2)
REACT_147867
Transport of inorganic cations/anions and amino acids/oligopeptides (2)
REACT_19397
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane (2)
REACT_1206
Transport of nucleotide sugars (5)
REACT_22151
Triglyceride Biosynthesis (2)
REACT_1190
Tryptophan catabolism (6)
REACT_916
Ubiquinol biosynthesis (1)
REACT_160111
Unblocking of NMDA receptor, glutamate binding and activation (1)
REACT_20594
Urea cycle (3)
REACT_847
Utilization of Ketone Bodies (2)
REACT_59
Vasopressin regulates renal water homeostasis via Aquaporins (1)
REACT_24023
VEGFA-VEGFR2 Pathway (2)
REACT_228166
VEGFR2 mediated vascular permeability (2)
REACT_228016
Vitamin B1 (thiamin) metabolism (2)
REACT_11117
Vitamin B2 (riboflavin) metabolism (2)
REACT_11070
Vitamin C (ascorbate) metabolism (2)
REACT_11202
Vitamin D (calciferol) metabolism (1)
REACT_13523
Vitamins (1)
REACT_13450
Vitamins B6 activation to pyridoxal phosphate (2)
REACT_25012
Xenobiotics (1)
REACT_13543
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