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ST002419 Metabolomic changes in growth of E. colik at four timespoints in MOPS rich and minimum mediumList of human metabolic pathways and metabolites (REACTOME)
Pathway name (# of metabolites detected in study)
Reactome pathway
Abacavir metabolism (2)
REACT_121388
ABH2 mediated Reversal of Alkylation Damage (1)
REACT_526
ABH3 mediated Reversal of Alkylation Damage (1)
REACT_1662
Abnormal metabolism in phenylketonuria (4)
REACT_121117
Activation of AMPA receptors (1)
REACT_18338
Activation of Ca-permeable Kainate Receptor (1)
REACT_21346
Activation of G protein gated Potassium channels (1)
REACT_75831
Activation of Na-permeable Kainate Receptors (1)
REACT_21343
Adenosine P1 receptors (1)
REACT_18288
Adenylate cyclase activating pathway (1)
REACT_15312
Aflatoxin activation and detoxification (3)
REACT_228214
Agmatine biosynthesis (2)
REACT_14800
alpha-linolenic acid (ALA) metabolism (1)
REACT_121147
Alpha-oxidation of phytanate (2)
REACT_17003
Amino acid synthesis and interconversion (transamination) (8)
REACT_238
Amino acid transport across the plasma membrane (20)
REACT_13796
Antigen Presentation: Folding, assembly and peptide loading of class I MHC (18)
REACT_75795
Antigen processing: Ubiquitination & Proteasome degradation (19)
REACT_75842
Astrocytic Glutamate-Glutamine Uptake And Metabolism (2)
REACT_13639
Biotin transport and metabolism (2)
REACT_11153
Branched-chain amino acid catabolism (5)
REACT_197
Carnitine synthesis (2)
REACT_2125
Catecholamine biosynthesis (1)
REACT_15551
Cholesterol biosynthesis (1)
REACT_9405
Citric acid cycle (TCA cycle) (4)
REACT_1785
Class A/1 (Rhodopsin-like receptors) (3)
REACT_14828
Class C/3 (Metabotropic glutamate/pheromone receptors) (4)
REACT_18319
Cleavage of the damaged pyrimidine (2)
REACT_2156
Cobalamin (Cbl, vitamin B12) transport and metabolism (1)
REACT_163862
Coenzyme A biosynthesis (2)
REACT_11218
Collagen biosynthesis and modifying enzymes (1)
REACT_121139
Condensation of Prophase Chromosomes (1)
REACT_172744
Conjugation of benzoate with glycine (3)
REACT_6933
Conjugation of phenylacetate with glutamine (2)
REACT_6800
Conjugation of salicylate with glycine (2)
REACT_6812
Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase (1)
REACT_6867
Creatine metabolism (2)
REACT_813
CREB phosphorylation through the activation of Adenylate Cyclase (1)
REACT_20625
CREB phosphorylation through the activation of CaMKII (2)
REACT_20642
Cross-presentation of soluble exogenous antigens (endosomes) (18)
REACT_111056
Cysteine formation from homocysteine (2)
REACT_115589
Cytosolic tRNA aminoacylation (19)
REACT_15306
degradation of AXIN (1)
REACT_200766
Degradation of cysteine and homocysteine (2)
REACT_115654
Degradation of GABA (3)
REACT_23964
Detoxification of Reactive Oxygen Species (1)
REACT_172715
Digestion of dietary carbohydrate (2)
REACT_9472
Downregulation of SMAD2/3:SMAD4 transcriptional activity (1)
REACT_121111
Downstream TCR signaling (1)
REACT_12555
Endosomal/Vacuolar pathway (18)
REACT_111168
eNOS activation (1)
REACT_12477
EPHB-mediated forward signaling (2)
REACT_228085
ER-Phagosome pathway (18)
REACT_111178
Ethanol oxidation (1)
REACT_34
Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion (1)
REACT_19193
Fatty acid, triacylglycerol, and ketone body metabolism (1)
REACT_22279
Fatty Acyl-CoA Biosynthesis (2)
REACT_1319
FCERI mediated NF-kB activation (1)
REACT_163994
Formation of the active cofactor, UDP-glucuronate (1)
REACT_6737
Free fatty acid receptors (3)
REACT_21268
GABA A receptor activation (1)
REACT_24987
GABA A (rho) receptor activation (1)
REACT_25168
GABA B receptor activation (1)
REACT_25031
GABA synthesis (2)
REACT_24020
GABA synthesis, release, reuptake and degradation (1)
REACT_23947
G alpha (i) signalling events (8)
REACT_19231
G alpha (q) signalling events (4)
REACT_18283
G alpha (s) signalling events (2)
REACT_19327
G alpha (z) signalling events (1)
REACT_19333
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion (1)
REACT_18274
Gluconeogenesis (4)
REACT_1520
Glutamate Neurotransmitter Release Cycle (2)
REACT_12591
Glutathione conjugation (1)
REACT_6926
Glutathione synthesis and recycling (20)
REACT_6960
Glycogen synthesis (1)
REACT_169208
Glycolysis (1)
REACT_1383
Glyoxylate metabolism (4)
REACT_16925
HDMs demethylate histones (1)
REACT_228178
Hedgehog 'off' state (1)
REACT_267634
Heme biosynthesis (2)
REACT_9465
Histidine catabolism (1)
REACT_1249
HIV Transcription Initiation (1)
REACT_6332
HS-GAG degradation (1)
REACT_120752
Hydrolysis of LPC (1)
REACT_120977
Hydrolysis of LPE (1)
REACT_120785
Hydroxycarboxylic acid-binding receptors (3)
REACT_163785
Inactivation, recovery and regulation of the phototransduction cascade (2)
REACT_163919
Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits (1)
REACT_25004
Interconversion of 2-oxoglutarate and 2-hydroxyglutarate (1)
REACT_25367
Interconversion of polyamines (1)
REACT_14805
ISG15 antiviral mechanism (1)
REACT_115831
Keratan sulfate biosynthesis (1)
REACT_121120
Ligand-gated ion channel transport (2)
REACT_25387
Linoleic acid (LA) metabolism (1)
REACT_121100
Lysine catabolism (2)
REACT_1298
Metabolism of folate and pterines (3)
REACT_11167
Metabolism of nucleotides (1)
REACT_1698
Metabolism of polyamines (3)
REACT_14820
Methionine salvage pathway (3)
REACT_75881
Methylation (3)
REACT_6946
Minus-strand DNA synthesis (1)
REACT_9055
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) (1)
REACT_228019
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) (1)
REACT_228145
Mitochondrial iron-sulfur cluster biogenesis (2)
REACT_150353
Mitochondrial tRNA aminoacylation (19)
REACT_15302
Molybdenum cofactor biosynthesis (4)
REACT_25073
mRNA decay by 3' to 5' exoribonuclease (1)
REACT_20619
mRNA decay by 5' to 3' exoribonuclease (1)
REACT_20518
Na+/Cl- dependent neurotransmitter transporters (18)
REACT_20506
NGF-independant TRKA activation (1)
REACT_11046
Nicotinamide salvaging (3)
REACT_11213
Nicotinate metabolism (3)
REACT_11088
Nitric oxide stimulates guanylate cyclase (2)
REACT_23862
Organic anion transport (1)
REACT_22310
Organic anion transporters (3)
REACT_19372
Orphan transporters (1)
REACT_267716
Oxidative Stress Induced Senescence (1)
REACT_169436
Oxygen-dependent asparagine hydroxylation of Hypoxia-inducible Factor Alpha (1)
REACT_121226
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha (1)
REACT_120916
PAOs oxidise polyamines to amines (1)
REACT_505
Passive transport by Aquaporins (1)
REACT_23826
PD-1 signaling (1)
REACT_19324
Pentose phosphate pathway (hexose monophosphate shunt) (1)
REACT_1859
Phagosomal maturation (early endosomal stage) (2)
REACT_121256
Phenylalanine and tyrosine catabolism (5)
REACT_1786
Phosphate bond hydrolysis by NUDT proteins (1)
REACT_150237
PKA activation (1)
REACT_15530
PKA activation in glucagon signalling (1)
REACT_1946
Platelet degranulation (1)
REACT_318
Pre-NOTCH Processing in Golgi (1)
REACT_118798
Presynaptic function of Kainate receptors (1)
REACT_21254
Proline catabolism (2)
REACT_1002
Proton-coupled monocarboxylate transport (1)
REACT_20515
Proton-coupled neutral amino acid transporters (3)
REACT_19348
Proton/oligonucleotide cotransporters (18)
REACT_19328
Purine catabolism (5)
REACT_2086
Purine ribonucleoside monophosphate biosynthesis (5)
REACT_1776
Purine salvage (5)
REACT_1923
Pyrimidine biosynthesis (5)
REACT_21376
Pyrimidine catabolism (6)
REACT_1023
Pyrimidine salvage reactions (4)
REACT_655
Pyruvate metabolism (1)
REACT_2071
Rap1 signalling (1)
REACT_23898
Ras activation uopn Ca2+ infux through NMDA receptor (2)
REACT_20546
Recycling of bile acids and salts (2)
REACT_11042
Regulation of HSF1-mediated heat shock response (1)
REACT_200780
Removal of DNA patch containing abasic residue (1)
REACT_2192
Removal of the Flap Intermediate (1)
REACT_70
Removal of the Flap Intermediate from the C-strand (1)
REACT_7999
Resolution of AP sites via the single-nucleotide replacement pathway (1)
REACT_933
Retinoid metabolism and transport (1)
REACT_24968
Reuptake of GABA (2)
REACT_23910
RNA Polymerase II HIV Promoter Escape (1)
REACT_6253
RNA Polymerase II Promoter Escape (1)
REACT_2089
RNA Polymerase II Transcription Initiation (1)
REACT_1851
Scavenging by Class A Receptors (1)
REACT_163699
Serine biosynthesis (2)
REACT_115789
Serotonin and melatonin biosynthesis (1)
REACT_15439
Sialic acid metabolism (2)
REACT_200874
SIRT1 negatively regulates rRNA Expression (1)
REACT_200827
Sodium-coupled sulphate, di- and tri-carboxylate transporters (2)
REACT_20646
Sphingolipid de novo biosynthesis (1)
REACT_115810
Stimuli-sensing channels (1)
REACT_160189
STING mediated induction of host immune responses (1)
REACT_147841
Sulfide oxidation to sulfate (2)
REACT_116010
Sulfur amino acid metabolism (6)
REACT_115639
SUMO is conjugated to E1 (UBA2:SAE1) (1)
REACT_163812
Synthesis and interconversion of nucleotide di- and triphosphates (4)
REACT_21330
Synthesis of 12-eicosatetraenoic acid derivatives (1)
REACT_150201
Synthesis of 15-eicosatetraenoic acid derivatives (1)
REACT_150422
Synthesis of 5-eicosatetraenoic acids (1)
REACT_150209
Synthesis of bile acids and bile salts via 24-hydroxycholesterol (1)
REACT_11053
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol (2)
REACT_11041
Synthesis of CL (1)
REACT_120920
Synthesis of Dolichyl-phosphate (1)
REACT_22230
Synthesis of GDP-mannose (1)
REACT_22423
Synthesis of IP2, IP, and Ins in the cytosol (1)
REACT_150352
Synthesis of Leukotrienes (LT) and Eoxins (EX) (3)
REACT_150420
Synthesis of PA (1)
REACT_120906
Synthesis of PC (2)
REACT_121238
Synthesis of PE (2)
REACT_120919
Synthesis of PG (3)
REACT_121280
Synthesis of PI (2)
REACT_121000
Synthesis of Prostaglandins (PG) and Thromboxanes (TX) (1)
REACT_150149
Synthesis of PS (1)
REACT_120823
Synthesis of UDP-N-acetyl-glucosamine (3)
REACT_22394
Synthesis of very long-chain fatty acyl-CoAs (1)
REACT_380
Synthesis, secretion, and deacylation of Ghrelin (2)
REACT_19189
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1) (3)
REACT_24019
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) (1)
REACT_23824
Termination of O-glycan biosynthesis (1)
REACT_115835
TET1,2,3 and TDG demethylate DNA (1)
REACT_200682
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation (1)
REACT_111176
The canonical retinoid cycle in rods (twilight vision) (1)
REACT_160156
Thyroxine biosynthesis (2)
REACT_15292
Transport and synthesis of PAPS (1)
REACT_6840
Transport of fatty acids (3)
REACT_23892
Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds (1)
REACT_19305
Transport of inorganic cations/anions and amino acids/oligopeptides (4)
REACT_19397
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane (8)
REACT_1206
Transport of nucleotide sugars (1)
REACT_22151
Triglyceride Biosynthesis (1)
REACT_1190
Tryptophan catabolism (4)
REACT_916
Ubiquinol biosynthesis (2)
REACT_160111
Unblocking of NMDA receptor, glutamate binding and activation (2)
REACT_20594
Uptake and function of anthrax toxins (1)
REACT_228255
Urea cycle (6)
REACT_847
Utilization of Ketone Bodies (1)
REACT_59
Vasopressin regulates renal water homeostasis via Aquaporins (1)
REACT_24023
VEGFR2 mediated vascular permeability (1)
REACT_228016
Vitamin B2 (riboflavin) metabolism (1)
REACT_11070
Vitamin C (ascorbate) metabolism (1)
REACT_11202
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