Log in
/
Register
Home
Overview
Upload / Manage Data
Browse / Search Studies
Analyze Studies
Tutorials
FAQ
Data Repository
Overview
Upload / Manage Studies
Browse / Search Studies
Analyze Studies
Data Sharing Policy
Tutorials
FAQ
Databases
Overview
Metabolite Database
Human Metabolome Gene/Protein Database (MGP)
RefMet: Reference List of Metabolite Names
External Metabolomics Databases (Links)
Protocols
Overview
General Protocols
Study-specific Protocols
Tools
Overview
Load and analyze your own dataset
Analyze Studies
MS Searches
Structure drawing
REST Service
External Tools (Links)
About
Overview
Publishing Partners
How to Cite
How to Link
Terms of Use
Personnel
Contact
Sitemap
Search
Keyword Search
Advanced Searches
ST002444 Zebrafish Optic Nerve Regeneration Metabolomics - 3 Days Post CrushList of human metabolic pathways and metabolites (REACTOME)
Pathway name (# of metabolites detected in study)
Reactome pathway
5-Phosphoribose 1-diphosphate biosynthesis (1)
REACT_850
Abacavir metabolism (3)
REACT_121388
Abnormal metabolism in phenylketonuria (2)
REACT_121117
Acetylcholine Neurotransmitter Release Cycle (2)
REACT_15309
Acetylcholine regulates insulin secretion (1)
REACT_18405
Activation of AMPA receptors (1)
REACT_18338
Activation of Ca-permeable Kainate Receptor (1)
REACT_21346
Activation of G protein gated Potassium channels (1)
REACT_75831
Activation of Na-permeable Kainate Receptors (1)
REACT_21343
Adenosine P1 receptors (1)
REACT_18288
Adenylate cyclase activating pathway (1)
REACT_15312
Aflatoxin activation and detoxification (2)
REACT_228214
Agmatine biosynthesis (2)
REACT_14800
alpha-linolenic acid (ALA) metabolism (1)
REACT_121147
Alpha-oxidation of phytanate (1)
REACT_17003
Amino acid synthesis and interconversion (transamination) (5)
REACT_238
Amino acid transport across the plasma membrane (18)
REACT_13796
Antigen Presentation: Folding, assembly and peptide loading of class I MHC (13)
REACT_75795
Antigen processing: Ubiquitination & Proteasome degradation (14)
REACT_75842
Aromatic amines can be N-hydroxylated or N-dealkylated by CYP1A2 (1)
REACT_13721
Astrocytic Glutamate-Glutamine Uptake And Metabolism (2)
REACT_13639
A tetrasaccharide linker sequence is required for GAG synthesis (2)
REACT_121408
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein (1)
REACT_22433
Biotin transport and metabolism (2)
REACT_11153
Branched-chain amino acid catabolism (2)
REACT_197
Carnitine synthesis (2)
REACT_2125
Catecholamine biosynthesis (3)
REACT_15551
Cholesterol biosynthesis (1)
REACT_9405
Chondroitin sulfate biosynthesis (1)
REACT_120989
Citric acid cycle (TCA cycle) (1)
REACT_1785
Class C/3 (Metabotropic glutamate/pheromone receptors) (7)
REACT_18319
Cleavage of the damaged purine (2)
REACT_1729
Cleavage of the damaged pyrimidine (2)
REACT_2156
Cobalamin (Cbl, vitamin B12) transport and metabolism (3)
REACT_163862
Coenzyme A biosynthesis (1)
REACT_11218
Collagen biosynthesis and modifying enzymes (2)
REACT_121139
Condensation of Prophase Chromosomes (2)
REACT_172744
Conjugation of benzoate with glycine (1)
REACT_6933
Conjugation of phenylacetate with glutamine (2)
REACT_6800
Conjugation of salicylate with glycine (1)
REACT_6812
Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase (1)
REACT_6867
Creatine metabolism (5)
REACT_813
CREB phosphorylation through the activation of Adenylate Cyclase (1)
REACT_20625
CREB phosphorylation through the activation of CaMKII (1)
REACT_20642
Cross-presentation of soluble exogenous antigens (endosomes) (13)
REACT_111056
CYP2E1 reactions (1)
REACT_13797
Cysteine formation from homocysteine (1)
REACT_115589
Cytosolic sulfonation of small molecules (1)
REACT_6913
Cytosolic tRNA aminoacylation (14)
REACT_15306
Defective B4GALT1 causes B4GALT1-CDG (CDG-2d) (1)
REACT_267635
Defective B4GALT7 causes EDS, progeroid type (1)
REACT_267711
Defective MTRR causes methylmalonic aciduria and homocystinuria type cblE (1)
REACT_169439
degradation of AXIN (1)
REACT_200766
Degradation of cysteine and homocysteine (3)
REACT_115654
Degradation of GABA (2)
REACT_23964
Detoxification of Reactive Oxygen Species (1)
REACT_172715
DNA methylation (2)
REACT_267652
Downregulation of SMAD2/3:SMAD4 transcriptional activity (1)
REACT_121111
Downstream TCR signaling (1)
REACT_12555
Endosomal/Vacuolar pathway (13)
REACT_111168
eNOS activation (2)
REACT_12477
Enzymatic degradation of dopamine by COMT (2)
REACT_15548
Enzymatic degradation of Dopamine by monoamine oxidase (1)
REACT_15511
EPHB-mediated forward signaling (1)
REACT_228085
ER-Phagosome pathway (13)
REACT_111178
Ethanol oxidation (1)
REACT_34
Fatty acids (2)
REACT_13814
FCERI mediated NF-kB activation (1)
REACT_163994
Formation of the active cofactor, UDP-glucuronate (1)
REACT_6737
formation of the beta-catenin:TCF transactivating complex (2)
REACT_200753
GABA A receptor activation (1)
REACT_24987
GABA A (rho) receptor activation (1)
REACT_25168
GABA B receptor activation (1)
REACT_25031
GABA synthesis (2)
REACT_24020
GABA synthesis, release, reuptake and degradation (1)
REACT_23947
Galactose catabolism (1)
REACT_532
G alpha (i) signalling events (6)
REACT_19231
G alpha (q) signalling events (6)
REACT_18283
G alpha (s) signalling events (2)
REACT_19327
G alpha (z) signalling events (1)
REACT_19333
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion (1)
REACT_18274
Gluconeogenesis (1)
REACT_1520
Glucuronidation (1)
REACT_6784
Glutamate Neurotransmitter Release Cycle (2)
REACT_12591
Glutathione conjugation (1)
REACT_6926
Glutathione synthesis and recycling (15)
REACT_6960
Glycogen synthesis (2)
REACT_169208
Glycosphingolipid metabolism (1)
REACT_116105
Hedgehog 'off' state (1)
REACT_267634
Heme biosynthesis (1)
REACT_9465
Heme degradation (1)
REACT_22297
Highly calcium permeable nicotinic acetylcholine receptors (1)
REACT_22352
Highly calcium permeable postsynaptic nicotinic acetylcholine receptors (1)
REACT_22303
Highly sodium permeable acetylcholine nicotinic receptors (1)
REACT_22223
Histidine catabolism (3)
REACT_1249
HIV Transcription Initiation (1)
REACT_6332
HS-GAG biosynthesis (1)
REACT_121248
Hydrolysis of LPC (1)
REACT_120977
Import of palmitoyl-CoA into the mitochondrial matrix (1)
REACT_11082
Inactivation, recovery and regulation of the phototransduction cascade (2)
REACT_163919
Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits (1)
REACT_25004
Interconversion of polyamines (2)
REACT_14805
ISG15 antiviral mechanism (1)
REACT_115831
Keratan sulfate biosynthesis (2)
REACT_121120
Ligand-gated ion channel transport (1)
REACT_25387
Linoleic acid (LA) metabolism (1)
REACT_121100
Lysine catabolism (2)
REACT_1298
Meiotic recombination (2)
REACT_27271
Metabolism of folate and pterines (2)
REACT_11167
Metabolism of nucleotides (2)
REACT_1698
Metabolism of polyamines (4)
REACT_14820
Methionine salvage pathway (3)
REACT_75881
Methylation (6)
REACT_6946
Minus-strand DNA synthesis (1)
REACT_9055
Miscellaneous substrates (1)
REACT_13425
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) (1)
REACT_228019
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) (1)
REACT_228145
Mitochondrial tRNA aminoacylation (14)
REACT_15302
Molybdenum cofactor biosynthesis (3)
REACT_25073
mRNA Capping (2)
REACT_1470
Muscarinic acetylcholine receptors (1)
REACT_16943
MyD88 dependent cascade initiated on endosome (1)
REACT_25222
Na+/Cl- dependent neurotransmitter transporters (15)
REACT_20506
Neurotransmitter Clearance In The Synaptic Cleft (2)
REACT_13583
NGF-independant TRKA activation (1)
REACT_11046
N-Glycan antennae elongation (1)
REACT_25085
N-glycan trimming and elongation in the cis-Golgi (1)
REACT_25210
Nicotinamide salvaging (2)
REACT_11213
Nicotinate metabolism (3)
REACT_11088
Nitric oxide stimulates guanylate cyclase (3)
REACT_23862
NoRC negatively regulates rRNA expression (2)
REACT_200856
O-linked glycosylation of mucins (2)
REACT_115606
Organic anion transporters (1)
REACT_19372
Organic cation transport (1)
REACT_22357
Orphan transporters (1)
REACT_267716
Oxidative Stress Induced Senescence (2)
REACT_169436
P2Y receptors (1)
REACT_18289
PAOs oxidise polyamines to amines (2)
REACT_505
PD-1 signaling (1)
REACT_19324
Pentose phosphate pathway (hexose monophosphate shunt) (1)
REACT_1859
Phagosomal maturation (early endosomal stage) (3)
REACT_121256
Phenylalanine and tyrosine catabolism (4)
REACT_1786
Phosphate bond hydrolysis by NUDT proteins (1)
REACT_150237
PKA activation (1)
REACT_15530
PKA activation in glucagon signalling (1)
REACT_1946
Platelet degranulation (1)
REACT_318
PRC2 methylates histones and DNA (2)
REACT_200808
Pre-NOTCH Processing in Golgi (2)
REACT_118798
Pre-NOTCH Processing in the Endoplasmic Reticulum (1)
REACT_118722
Presynaptic function of Kainate receptors (1)
REACT_21254
Proline catabolism (1)
REACT_1002
Proton/oligonucleotide cotransporters (13)
REACT_19328
Purine catabolism (10)
REACT_2086
Purine ribonucleoside monophosphate biosynthesis (3)
REACT_1776
Purine salvage (10)
REACT_1923
Pyrimidine biosynthesis (3)
REACT_21376
Pyrimidine catabolism (5)
REACT_1023
Pyrimidine salvage reactions (4)
REACT_655
Rap1 signalling (1)
REACT_23898
Ras activation uopn Ca2+ infux through NMDA receptor (1)
REACT_20546
Recycling of bile acids and salts (2)
REACT_11042
Regulation by TREX1 (1)
REACT_163652
Regulation of HSF1-mediated heat shock response (1)
REACT_200780
Removal of DNA patch containing abasic residue (1)
REACT_2192
Resolution of AP sites via the single-nucleotide replacement pathway (1)
REACT_933
Reuptake of GABA (2)
REACT_23910
RMTs methylate histone arginines (2)
REACT_228108
RNA Polymerase II HIV Promoter Escape (1)
REACT_6253
RNA Polymerase II Promoter Escape (1)
REACT_2089
RNA Polymerase II Transcription Initiation (1)
REACT_1851
Role of phospholipids in phagocytosis (1)
REACT_160158
Senescence-Associated Secretory Phenotype (SASP) (2)
REACT_169168
Serine biosynthesis (2)
REACT_115789
Serotonin and melatonin biosynthesis (3)
REACT_15439
Sialic acid metabolism (2)
REACT_200874
SIRT1 negatively regulates rRNA Expression (3)
REACT_200827
snRNP Assembly (1)
REACT_11066
Sphingolipid de novo biosynthesis (2)
REACT_115810
Stimuli-sensing channels (1)
REACT_160189
STING mediated induction of host immune responses (1)
REACT_147841
Sulfide oxidation to sulfate (1)
REACT_116010
Sulfur amino acid metabolism (7)
REACT_115639
SUMO is conjugated to E1 (UBA2:SAE1) (1)
REACT_163812
Synthesis and interconversion of nucleotide di- and triphosphates (5)
REACT_21330
Synthesis of 12-eicosatetraenoic acid derivatives (1)
REACT_150201
Synthesis of 15-eicosatetraenoic acid derivatives (1)
REACT_150422
Synthesis of 5-eicosatetraenoic acids (1)
REACT_150209
Synthesis of bile acids and bile salts via 24-hydroxycholesterol (1)
REACT_11053
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol (2)
REACT_11041
Synthesis of Dolichyl-phosphate (1)
REACT_22230
Synthesis of epoxy (EET) and dihydroxyeicosatrienoic acids (DHET) (1)
REACT_150417
Synthesis of GDP-mannose (1)
REACT_22423
Synthesis of glycosylphosphatidylinositol (GPI) (1)
REACT_952
Synthesis of IP2, IP, and Ins in the cytosol (1)
REACT_150352
Synthesis of Leukotrienes (LT) and Eoxins (EX) (3)
REACT_150420
Synthesis of PA (1)
REACT_120906
Synthesis of PC (5)
REACT_121238
Synthesis of PE (2)
REACT_120919
Synthesis of PG (2)
REACT_121280
Synthesis of PI (1)
REACT_121000
Synthesis of Prostaglandins (PG) and Thromboxanes (TX) (1)
REACT_150149
Synthesis of PS (2)
REACT_120823
Synthesis of UDP-N-acetyl-glucosamine (3)
REACT_22394
Synthesis of very long-chain fatty acyl-CoAs (1)
REACT_380
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1) (1)
REACT_24019
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation (1)
REACT_111176
Thyroxine biosynthesis (1)
REACT_15292
Toll Like Receptor 7/8 (TLR7/8) Cascade (1)
REACT_9020
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation (1)
REACT_25024
TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling (1)
REACT_25120
Transport and synthesis of PAPS (1)
REACT_6840
Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds (1)
REACT_19305
Transport of inorganic cations/anions and amino acids/oligopeptides (3)
REACT_19397
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane (11)
REACT_1206
Transport of nucleotide sugars (1)
REACT_22151
Tryptophan catabolism (4)
REACT_916
Ubiquinol biosynthesis (3)
REACT_160111
Unblocking of NMDA receptor, glutamate binding and activation (1)
REACT_20594
Uptake and function of anthrax toxins (1)
REACT_228255
Urea cycle (5)
REACT_847
Vasopressin regulates renal water homeostasis via Aquaporins (1)
REACT_24023
VEGFR2 mediated vascular permeability (2)
REACT_228016
Vitamin B2 (riboflavin) metabolism (1)
REACT_11070
Vitamin C (ascorbate) metabolism (1)
REACT_11202
Vitamins B6 activation to pyridoxal phosphate (1)
REACT_25012
Metabolomics Workbench
Terms of use
Site map
Contact