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Select Experimental Studies by species, sample source or disease association:
Species:
-
Abiotic
Acidithiobacillus
Acinetobacter
Acinetobacter baumannii
Acropora cervicornis
Actinobacteria
Alexandrium catenella
Alexandrium minutum
Alexandrium pacificum
Alexandrium tamarense
Algae
Alkanet
Alpinaria cf. rhododendri
Alternaria alternata
Alternaria arborescens
Alternaria cf. alternata
Alternaria infectoria
Amphipods
Ant
Anthostomella sp.
Aposphaeria corallinolutea
Apple
apple, pear
Arabidopsis thaliana
Arctic lamprey
Articulospora atra
Aspergillus amstelodami
Aspergillus niger
Athorix
Aurantiochytrium limacinum
Aureobasidium cf. subglaciale
Auxenochlorella
Baboon
Bacillus cereus
Bacillus megaterium
Bacillus pumilus
Bacillus subtilis
Bacteria
Bacteroides
Bacteroides fragilis
Bacteroides ovatus
Bacteroides thetaiotaomicron
Bacteroides uniformis
Banana
Barbatosphaeriaceae sp.
Barley
Basil
Beet
Bermudagrass
Bifidobacterium
Bighorn sheep
Biofilm Microbial Community
Black flying fox fruit bat
Black mustard
Blautia producta
Blood parasite
Botrytis cinerea
Brine shrimp
Bumble Bee
Cabbage
Camaropella sp.
Camelina
Candida albicans
Candida auris
Capybara
Carrot
Casaresia cf. sphagnorum
Cassiopea andromeda
Cat
Catshark
Cattle
C. difficile
C. elegans
Centella asiatica
Chacrona
Chaetopsis sp.
Chicken
Chickpea
Chili pepper
Chinese brake fern
Chinese hamster
Chlamydomonas reinhardtii
Chlorella
Cladosporium allicinum
Cladosporium cf. cladosporioides
Clam
Clostridium clostridioforme
Clostridium hathewayi
Clostridium hylemonae
Clostridium scindens
Clostridium symbiosum
Colletotrichum cf. truncatum
Colletotrichum fioriniae
Common bean
Common gromwell
Common prawn
Coniochaeta cf. marina
Coniothyrium ferrarisianum
Cordyceps
Cormus domestica
Corydalis yanhusuo
Corylus americana
Corylus avellana
Cow
Crayfish
Creosphaeria sassafras
Cryptococcus neoformans
Cryptosporella sp.
Cytospora cf. cedri
Cytospora ribis
Date palm
Diaporthe phaseolorum
Diaporthe vaccinii
Didymella pomorum
Didymella sp.
Discosia rubi
Dog
Dolphin
Dothideaceae sp.
Dungeness crab
Echium vulgare
Eggerthella lenta
Enterobacter sp.
Enterococcus faecalis
Enterococcus faecium
Enterococcus hirae
Epicoccum nigrum
Epicoleosporium ramularioides
Equisetum arvense
Equisetum hyemale
Equisetum telmateia
Escherichia coli
Escherichia fergusonii
European pepper moth
Exaiptasia diaphana
Exidia glandulosa
Faecalibacterium prausnitzii
Flame Bromeliad
Flavonifractor plautii
Flesh Fly
Florida manatee
Food item
Fragilariopsis cylindrus
Frog
Fruit fly
Fungi
Fusarium tricinctum
Fusobacterium nucleatum
Garlic
Geastrumia polystigmatis
Ginger
Ginkgo biloba
Ginseng
Gloeophyllum sepiarium
Glycyrrhiza glabra
Goat
Godronia cassandrae
Godronia cf. cassandrae
Golden hamster
Grass
Guinea Grass
Habanero pepper
Haemophilus influenzae
Heart-leaved poison
Holly oak
Honey bee
Hooded seal
Horse
Human
Hyaloscyphaceae sp.
Hypoderma cf. rubi
Hypoxylon submonticulosum
Ilyonectria estremocensis
Ilyonectria mors-panacis
Ilyonectria robusta
Ilyonectria rufa
Ilyonectria torresensis
Karenia brevis
Kretzschmaria hedjaroudei
Lachnellula calyciformis
Lachnum sp.
Lacticaseibacillus rhamnosus and Faecalibacterium prausnitzii
Lactobacillus
Lake water
Lentilactobacillus kefiri
Leptodontidium sp.
Lettuce
Little brown bat
Long pepper
Lophiotrema mucilaginosis
Loquat
Macaque monkey
Maize
Malassezia globosa
Malaysian red seaweed
Marine microbes
Marine plankton
Maritime pine
Marmoset
Maryland blue crab
Mayfly
Methanococcus maripaludis
Microbacterium sediminis
Microchloropsis gaditana
Microdochium neoqueenslandicum
Millet
Mollisia cf. melaleuca
Mollisia cf. nigrescens
Mollisia sp.
Mosquito
Moss
Mouse
Mozambique tilapia
M. tuberculosis
Mucidula mucida
Mus musculus
Mycoplasma mycoides, Minimal cell JCVI-syn3B
Nannochloropsis
Navicula cf. perminuta
Navicula pelliculosa
Nemania diffusa
Nemania serpens
Nemania sp.
Neocucurbitaria sp.
Neodevriesiaceae sp.
Neonectria obtusispora
Neovaginatispora sp.
Nigrospora sp.
Nigrospora sphaerica
Nitzschia lecointei
Oat
Oil palm
Olive
Onion
Ophiocordyceps
Orange
Orange-spotted grouper
Other abiotic sample
Pacific Abalone
Panax ginseng
Parabacteroides distasonis
Paramycosphaerella sp.
Paraphaeosphaeria neglecta
Peach
Pear
Pendant amaranth
Penicillium camponotum
Phaeoacremonium fraxinopennsylvanicum
Phaeodactylum tricornutum
Phaeomoniellales sp.
Phialocephala sp.
Phyllosticta cf. pyrolae
Phyllosticta pyrolae
Phyllostictina vaccinii
Phytoplankton
Picochlorum celeri
Pig
Pilidium concavum
Pine
Plagiostoma petiolophilum
Plankton
Plants
Plasmodium berghei
Plasmodium falciparum
Pleosporales sp.
Poplar
Populus trichocarpa
Porphyromonas gingivalis
Potato
Proliferodiscus sp.
Propionibacterium
Pseudomonas aeruginosa
Pseudoplectania nigrella
Purslane
Pyrenopeziza sp.
Rabbit
Rainbow trout
Ramularia sp.
Rapeseed
Rat
Red-striped killifish
Rhesus monkey
Rhytismataceae sp.
Rice
Rickettsia parkeri
Rothia
Roundworm
Rubber tree
Rubrivivax benzoatilyticus
Ruegeria pomeroyi
Rumex patientia
Saccharomyces cerevisiae
Sage
Salmonella enterica
Salmonella typhimurium
Sarea difformis
Seal
Seawater
Seimatosporium lichenicola
S. epidermidis
Setomelanomma holmii
Sheep
Sinorhizobium
Soybean
Sphaerulina vaccinii
Spinach
Squirrel
Staphylococcus aureus
Staphylococcus epidermidis
Stemphylium globuliferum
Strawberry
Streptococcus
Streptococcus mutans
Streptococcus pyogenes
Stylophora pistillata
Sugarcane
Sugar Maple
Sulfolobus acidocaldarius
Sulfolobus islandicus
Swine colonic microbiota
Symbiodiniaceae
Synechococcus
Synechococcus elongatus
Synthetic
Tea plant
Thalassiosira pseudonana
Thermococcus kodakarensis
Thermococcus sp. AM4
Thyronectria cucurbitula
Tobacco
Tomato
Toxoplasma gondii
Treponema
Trichaptum abietinum
Trypanosoma brucei
Turquoise killifish
Tympanidaceae sp.
Unknown
Veillonella parvula
Venturia sp.
Vibrio cholerae
Vine
Water flea
Western clawed frog
Wheat
White-footed mouse
Woody vine
Wuchang bream
Xylariaceae sp.
Xylaria corniformis
Xylaria ellisii
Xylaria sp.
Yew
Zebrafish
Sample source:
Acorns
Adipocyte media
Adipocytes
Adipose Pannus
Adipose tissue
Adrenal gland
Algae
AML cells
Amniotic fluid
Anther
Aortic valve tissue
Arteries
Astrocyte cells
Atria
Back of Eye
Bacterial cells
Bacterial media
Bacteroides
BAT
B-cells
Bee heads
Biofilm
Biopsy
Bladder
Blastocysts
Blood
Blubber
Bone
Bone marrow
Bovine meat
Brain
Brain Cancer Cells
Brain cortex
Brain organoids
Brainstem
Breast
Breast cancer cells
Breast milk
Breast tissue
Breath
Bronchoalveolar lavage
Brown adipose
Buccal
Cancer cells
Capsicum Chinense
Cardiomyocyte cells
Carotid artery
Cecal content
Cecum
Cells
Cerebrospinal fluid
CHO cells
Chow diet
CNS
Colon
Colonic mucosa
Colorectal Cancer Cells
Colorectal Tissue
Coral nubbins
Corpus Luteum
Cortex
CSF
Cultured cells
Culture media
Cyst fluid
Date palm fruit
Diaphragm
Diatom cells
Diet
Digestive fluid
Dorsal Root Ganglia
DSI
Duodenum
Eggs
Embryonic cells
Endothelial cells
Epidermis
Epididymal fat
Epithelial cells
Epithelial lining fluid
Erythrocytes
Esophagus
Exhaled Breath condensate
Extracellular fluid
Eye tissue
Feces
Fibroblast cells
Fibrous root
Fish larvae
Flushing
Fly
Fly Head
Follicular fluid
Food
Foreskin
Fruit
Fruit juice
Fungal/bacterial volatiles
Fungal cells
Fungus
Galea
Gallbladder
Gastrocnemius
Gill
Glioma cells
gWAT
Head tissue
Heart
HEK cells
HeLa cells
Hemolymph
Hepatopancreas
Hep G2 cells
Hippocampus
Human iPSC
Human tissue
Hypothalamus
Ileum
Infected Red Blood Cells
Insect tissue
Interstitial fluid
Intestinal fluid
Intestine
Intracellular Granulocyte
iPSC cells
Jejunum
Keratinocytes
Kidney
Kidney tissue
Larvae
Latex
Leaf
Leaves
Leukemia cells
Liver
Liver Cancer Cell Line
LNCaP cells
Lung
Lung Tumors
Lymph fluid
Lymph node
Lymphoma cells
Macrophages
Maize kernel
Maize starchy endosperm
Mammary gland
Marine particulate matter
Media
Merozoites
Mesenchymal stromal cells
Mesenteric lymph
Microbial Film
Microglia
Milk
Minimal cell JCVI-syn3B
Mitochondria
Mononuclear cells
Mouse tissue
MSI
Multiple tissues
Muscle
Mycelia in media
Mycoplasma mycoides
Myotubes
Nasal Polyp tissue
Neurons
Neurospheres
Neutrophils
Notochord
Nucleus accumbens
Optic nerve
Ovarian cancer cells
Ovaries
Pancreas
Parasite
Peritoneal fluid
Peritoneal macrophages
Photosynthetic organism
PJI Tissue
Placenta
Plankton
Plant
Plant Leaves and Roots
Plant pollen
Plaque samples
Plasmodium cells
Pooled sample
Prostate
Prostate cancer cells
Proximal tubular cells
PSI
Quadriceps
Rectum
Renal cancer cells
Retina
Rhizome
Rhizosphere
Ribonucleic acid
Roots
Saliva
Sarcoma
Scalp
Seaweed
Seedlings
Seeds
Seminal plasma
Sewage
Shrimp organs
SI
SIHUMIx
Skeleton
Skin
Small intestine
Smooth muscle
Soil
Sorted cells
Spermatozoa
Spinal cord
Spleen
Splenocytes
Sputum
Standard phosphatidylcholines
Stem cells
Stomach
Stool
Subcutaneous fat
Supernatant
Supraneuralbody
Suspended Marine Particulate Matter
Sweat
Synthetic
Tail
T-cells
Tear
Testes
Thyroid
Tissue
Tongue
Tritrichomonas musculis cells
Tumor allograft
Tumor cells
Tumor interstitial fluid
Tumor tissue
Ulcer biopsies
Umbilical cord plasma
Unspecified
Urine
Uterine fluid
Uterus
Vaginal epithelium
Vascular smooth muscle cells
Vastus lateralis
Vena cava
Ventricles
Vitreous
Wastewater
Water
White adipose
Whole animals
Whole insect
Whole Tissue
Whole tumor
Whole worm lysate
Wine
Worms
Yeast cells
Disease:
Abdominal aortic aneurysm
Abiotic stress
Acute kidney injury
Acute respiratory distress syndrome
Addiction
Adrenoleukodystrophy
Alcoholism
Alkaptonuria
Allergy
Alopecia
ALS
Alzheimers disease
Anemia
Angina
Anorexia nervosa
Antibiotic resistance
Anxiety
Arthralgia
Arthritis
Asthma
Atherosclerosis
Atopic dermatitis
Atrial fibrillation
Autism
Autoimmune disease
Bacterial infection
Barth Syndrome
Bipolar disorder
Bipolar I Disorder
Blood Disorder
Brain disease
Brain injury
Cachexia
Cancer
Cardiomyopathy
Cardiotoxicity
Cardiovascular disease
Cerebellar ataxia
Cerebrovascular disease
Chronic fatigue syndrome
Chronic kidney disease
Chronic liver disease
Chronic stress
Circadian Rhythm Disorder
Clubroot disease
Coccidioidomycosis
Cognitive impairment
Colitis
COPD
COVID-19
Cow's milk allergy
Crohns disease
Cystic fibrosis
Dementia
Dengue
Dental erosion
Dental plaque
Depression
Dermatitis
Developmental Disorders
Diabetes
Diabetes, Cardiovascular Disease
DNA damage response
Down syndrome
Drug addiction
Duchenne Muscular Dystrophy
Eczema
Endometriosis
Endotoxemia
Enterocolitis
Environmental exposure
Eosinophilic Esophagitis
Epilepsy
Eye disease
Fatty liver disease
Ferroptosis
Fibrosis
Friedreichs Ataxia
Fungal infection
Galactosemia
Gastrointestinal disease
Genetic disease
Genetic Disease
Giardia infection
Glaucoma
GLUT1 Deficiency Syndrome
Graft versus host disease
Halitosis
Heart disease
Heart injury
Heat stroke
Highly lethal Vibrio disease
HIV
HPV infection
HSV infection
Huntingtons disease
Hypercortisolemia
Hyperglycemia
Hyperlipidemia
Hypertension
Hypoglycemia
Hypospadias
Hypoxia
Immune system disorders
Infection
Infertility
Inflammation
Inflammatory bowel disease
Influenza
Interstitial cystitis
Irritable bowel syndrome
Ischemia
Kidney disease
Kidney Disease
Krabbe disease
Leigh syndrome
Leishmaniasis
Leprosy
Liver disease
Liver failure
Low birth weight
Lung cancer
Lung disease
Lung injury
Lupus
Lupus nephritis
Lyme disease
Lymphatic filariasis
Malaria
Malnutrition
Maple Syrup Urine Disease
Maternal Hypoxemia
Maternal immune system activation
Melioidosis
Meningoencephalitis
Mental health
Metabolic syndrome
Micronutrient deficiency
Mitochondrial disease
Mosaic virus infection
Multiple myeloma
Multiple sclerosis
Muscular dystrophy
Musculoskeletal system disease
Myalgic encephalomyelitis/chronic fatigue syndrome
Myopathy
NASH
Necrotizing soft-tissue infections
Neurodegenerative disease
Neuropathy
Obesity
Organ transplantation
Osteoarthritis
Osteoporosis
Oxidative stress
Ozone Stress
Pancreatitis
Parasitic infection
Parkinsons disease
Peanut allergy
Pediatric nephrotic syndrome
Periodontal disease
Peripheral artery disease
Placenta disease
Placental Abruption
Polycystic ovary syndrome
Preeclampsia
Prion disease
Pseudoexfoliation syndrome
Psoriasis
Pulmonary disease
Pulmonary hypertension
Radiation exposure
Retinopathy
Retinopathy of prematurity
Rheumatoid arthritis
Salmonella
Sarcoidosis
Sarcopenia
Schizophrenia
Scleroderma
Scrapie
Sepsis
Septic shock
Sickle cell disease
Skin disease
Sleep apnea
Sleeping sickness
Spinal cord injury
Spondylitis
Staphylococcus infection
Stress
Stroke
Sudden infant death syndrome
Systemic lupus erythematosus
Thrombosis
Thyroid toxicity
Toxic shock
Trauma
Traumatic brain injury
Tuberculosis
Tuberculosis; Meningitis
Tuberous sclerosis
Twin-twin transfusion syndrome
Ulcerative colitis
Urinary tract infection
Valley fever
Very long acylcarnitine dehydrogenase deficiency
Viral infection
Vision Loss
Vitamin A deficiency
VLCAD deficiency
White-nose syndrome
Wilson disease
Yellow fever
Zinc deficiency
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UCSD Metabolomics Workbench, a resource sponsored by the Common Fund of the National Institutes of Health
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