Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST000404)

(Analysis AN000644)

Metabolite	Structure	F1	F2	F3
1-monoolein	ME136229	0.05	0.04	2.91
trehalose	ME136068	0.01	0.01	2.98
3-phosphoglycerate	ME136220	0.82	1.44	0.74
tocopherol alpha-	ME136070	1.30	0.95	0.75
bisphosphoglycerol NIST	ME136199	1.39	0.85	0.77
methionine sulfoxide	ME136122	1.32	0.85	0.83
pentitol	ME136098	1.34	1.17	0.49
sucrose	ME136076	1.30	1.06	0.64
arachidic acid	ME136206	1.34	0.63	1.03
fructose-1-phosphate	ME136177	1.30	0.56	1.14
N-acetyl-D-galactosamine	ME136117	1.19	0.91	0.90
1-hexadecanol	ME136231	1.16	0.92	0.91
cytidine-5-monophosphate	ME136188	1.15	0.93	0.91
dihydroxyacetone	ME136184	1.19	0.87	0.94
glycerol-alpha-phosphate	ME136162	1.16	0.90	0.94
cytidine	ME136189	1.17	0.85	0.98
orotic acid	ME136107	1.18	0.84	0.99
levoglucosan	ME136132	1.11	0.91	0.98
pyridoxal-5-phosphate	ME136089	1.11	0.90	0.98
adenosine	ME136214	1.12	0.89	0.98
fructose	ME136178	1.13	0.88	0.99
putrescine	ME136090	1.13	0.88	0.99
maleimide	ME136128	1.08	0.92	1.01
dehydroabietic acid	ME136187	1.10	0.90	1.00
glucose-6-phosphate	ME136169	1.10	0.89	1.01
aminomalonate	ME136208	0.91	1.03	1.07
xanthine	ME136059	0.90	1.03	1.07
pipecolinic acid	ME136092	0.96	0.95	1.09
benzoic acid	ME136202	0.95	0.94	1.10
glucoheptulose	ME136172	0.96	0.94	1.10
glycyl tyrosine	ME136158	0.92	1.00	1.08
isoleucine	ME136140	0.94	1.00	1.06
tyrosine	ME136066	0.93	1.01	1.07
proline	ME136091	0.94	0.97	1.09
trans-4-hydroxy-L-proline	ME136069	0.93	0.98	1.09
2-monoolein	ME136224	0.94	0.98	1.08
xylulose NIST	ME136054	0.94	0.98	1.08
threonine	ME136072	0.96	0.98	1.06
valine	ME136060	0.95	0.99	1.07
guanine	ME136157	1.06	0.89	1.05
5-aminovaleric acid	ME136219	1.05	0.90	1.05
adenine	ME136215	1.06	0.90	1.04
indole-3-lactate	ME136145	1.06	0.90	1.04
fucose	ME136175	1.07	0.87	1.06
UDP-glucuronic acid	ME136065	1.07	0.88	1.05
1-monopalmitin	ME136228	1.08	0.88	1.04
creatinine	ME136193	1.07	0.89	1.04
palmitoleic acid	ME136102	1.03	0.87	1.10
erythritol	ME136181	1.04	0.88	1.09
isothreonic acid	ME136139	1.03	0.89	1.08
lactitol	ME136137	1.03	0.89	1.09
capric acid	ME136198	1.02	0.91	1.07
xylitol	ME136057	1.02	0.93	1.05
docosahexaenoic acid	ME136183	1.02	0.92	1.06
heptadecanoic acid	ME136155	1.02	0.93	1.06
octadecanol	ME136111	1.05	0.92	1.04
stearic acid	ME136077	1.04	0.90	1.06
nicotinamide	ME136113	1.04	0.91	1.05
pantothenic acid	ME136101	1.03	0.92	1.05
glycine	ME136161	0.99	0.94	1.06
homoserine	ME136149	0.99	0.92	1.09
beta-glycerolphosphate	ME136200	1.00	0.92	1.08
pelargonic acid	ME136100	1.00	0.92	1.08
N-acetylmannosamine	ME136114	1.03	0.97	1.00
mannitol	ME136126	1.04	0.97	0.99
oleic acid	ME136110	1.03	0.97	0.99
adenosine-5-monophosphate	ME136213	1.03	0.98	0.99
lignoceric acid	ME136131	1.03	0.98	0.99
phosphoethanolamine	ME136094	1.04	1.00	0.96
alpha-ketoglutarate	ME136209	1.04	0.99	0.98
mannose-6-phosphate NIST	ME136125	1.05	0.98	0.97
methanolphosphate	ME136124	1.05	0.98	0.97
terephthalic acid	ME136074	1.07	0.97	0.96
palatinitol	ME136104	1.06	0.99	0.95
xanthosine	ME136058	1.06	0.99	0.95
guanosine	ME136156	1.05	0.93	1.02
myristic acid	ME136119	1.05	0.94	1.01
3-phenyllactic acid	ME136221	1.04	0.95	1.01
cysteine	ME136192	1.03	0.95	1.02
N-acetylglutamate	ME136115	1.10	0.93	0.97
phosphate	ME136096	1.09	0.94	0.97
lauric acid	ME136134	1.05	0.96	0.99
hydroquinone	ME136148	1.06	0.96	0.99
hypoxanthine	ME136146	1.06	0.95	0.99
asparagine	ME136205	1.08	0.94	0.98
fumaric acid	ME136174	1.07	0.95	0.98
oxoproline	ME136105	0.99	0.99	1.02
ribose	ME136085	0.98	1.00	1.02
cerotinic aci	ME136197	1.00	1.01	0.99
behenic acid	ME136203	1.01	0.99	1.00
2-hydroxypyrazinyl-2-propenoic acid ethyl ester NIST	ME136225	1.01	1.00	0.99
1-methylinosine NIST	ME136230	1.00	1.00	1.00
lactulose	ME136135	1.00	1.00	1.00
palmitic acid	ME136103	1.02	0.96	1.03
1-monostearin	ME136227	1.00	0.97	1.03
hexuronic acid	ME136151	1.00	0.96	1.04
serine	ME136081	1.00	0.95	1.05
ribose-5-phosphate	ME136084	1.01	0.95	1.04
2-hydroxyglutaric acid	ME136226	1.01	0.95	1.04
citric acid	ME136194	1.01	0.95	1.04
pentadecanoic acid	ME136099	0.97	0.99	1.04
xylose	ME136055	0.99	0.98	1.04
alanine	ME136211	0.98	0.97	1.05
UDP GlcNAc	ME136064	0.97	0.97	1.05
pyruvic acid	ME136087	1.04	1.12	0.84
dihydrocholesterol	ME136185	1.08	1.06	0.86
uridine-5-monophosphate	ME136061	1.08	1.07	0.85
lyxitol	ME136129	1.09	1.10	0.82
aspartic acid	ME136204	1.11	1.08	0.81
inosine-5-monophosphate	ME136143	1.10	1.09	0.81
5-methoxytryptamine	ME136217	1.15	1.01	0.84
dodecanol	ME136182	1.04	1.03	0.93
glyceric acid	ME136164	1.05	1.03	0.92
cholesterol	ME136196	1.10	1.01	0.88
galactinol	ME136173	1.11	1.02	0.87
inosine	ME136144	1.09	1.01	0.91
cis-gondoic acid	ME136195	1.09	0.99	0.91
glucose	ME136171	1.09	0.99	0.91
2,5-dihydroxypyrazine NIST	ME136233	1.07	1.00	0.93
oxalic acid	ME136106	1.07	1.01	0.91
1,2-anhydro-myo-inositol NIST	ME136232	0.99	1.10	0.91
myo-inositol	ME136120	1.00	1.12	0.88
n-acetyl-d-hexosamine	ME136116	0.97	1.16	0.86
phosphoenolpyruvate	ME136095	0.93	1.19	0.88
leucine	ME136133	0.97	1.02	1.01
methionine	ME136123	0.97	1.04	0.99
isohexonic acid	ME136141	0.95	1.03	1.02
phenylalanine	ME136097	0.95	1.04	1.00
tryptophan	ME136067	0.95	1.04	1.00
adipic acid	ME136212	1.00	1.05	0.95
D-erythro-sphingosine	ME136186	1.00	1.03	0.97
malic acid	ME136127	1.01	1.03	0.96
lactose	ME136136	0.97	1.06	0.96
ribulose-5-phosphate	ME136083	0.98	1.08	0.94
glutaric acid	ME136166	0.91	1.12	0.97
spermidine	ME136079	0.91	1.13	0.96
alpha-aminoadipic acid	ME136210	0.90	1.16	0.94
glycocyamine	ME136160	0.87	1.17	0.96
histidine	ME136150	0.85	1.09	1.06
hexitol	ME136154	0.92	1.09	0.99
saccharopine	ME136082	0.92	1.08	1.00
ornithine	ME136108	0.90	1.08	1.02
glutamic acid	ME136168	0.89	1.11	1.00
hexose	ME136153	0.88	1.10	1.02
fructose-6-phosphate	ME136176	1.29	0.74	0.97
2-monopalmitin	ME136223	1.25	0.82	0.93
inositol-4-monophosphate	ME136142	1.23	0.79	0.98
p-hydroxylphenyllactic acid	ME136093	1.22	0.77	1.00
glutathione	ME136165	1.21	0.67	1.12
glycerol-3-galactoside	ME136163	1.21	0.70	1.09
hexose-6-phosphate	ME136152	1.19	0.71	1.11
thymine	ME136071	1.13	0.79	1.08
aconitic acid	ME136216	1.15	0.78	1.06
sorbitol	ME136080	1.15	0.78	1.06
beta-alanine	ME136201	1.04	0.84	1.12
hydroxylamine	ME136147	1.07	0.85	1.08
lactic acid	ME136138	1.07	0.81	1.12
N-acetylaspartic acid	ME136118	1.08	0.82	1.10
threonic acid	ME136073	1.08	0.82	1.10
arabitol	ME136207	1.09	0.77	1.14
erythrose	ME136180	1.04	0.79	1.17
uracil	ME136063	1.04	0.81	1.15
lysine	ME136130	0.73	1.13	1.14
cysteine-glycine	ME136191	0.83	1.02	1.14
xylonolactone NIST	ME136056	0.81	1.08	1.12
N-methylalanine	ME136112	0.80	0.90	1.30
taurine	ME136075	0.94	0.73	1.33
spermine	ME136078	0.93	0.80	1.27
ethanolamine	ME136179	0.91	0.83	1.26
monomyristin	ME136121	0.92	0.83	1.26
5-deoxy-5-methylthioadenosine	ME136218	0.99	0.81	1.20
glycolic acid	ME136159	0.95	0.83	1.22
ribitol	ME136086	0.95	0.82	1.23
cystine	ME136190	0.91	0.94	1.16
3 hydroxy-3-methylglutaric acid	ME136222	0.98	0.86	1.16
pyrophosphate	ME136088	0.96	0.89	1.15
urea	ME136062	0.94	0.90	1.16
glutamine	ME136167	0.50	1.23	1.27
glucose-1-phosphate	ME136170	0.81	0.74	1.45
O-phosphoserine	ME136109	0.64	0.91	1.46

Factors:

F1	Genotype:clone 5 HVCN1 shRNA
F2	Genotype:clone 6 HVCN1 shRNA
F3	Genotype:Scrambled shRNA

Data matrix