Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST002172)

(Analysis AN003559)

Metabolite	Structure	F1	F2	F3	F4
N1,N12-Diacetylspermine	ME530688	0.11	NA	0.36	6.24
5-Aminovalerate	ME530823	0.24	0.24	2.55	0.97
Citrulline	ME530605	0.22	0.28	2.58	0.91
2AB	ME530795	0.16	0.08	2.61	1.15
Taurine	ME530756	0.34	0.14	2.41	1.11
Acetylcholine	ME530565	0.20	0.15	3.20	0.46
Glu-Glu	ME530635	0.24	0.18	3.42	0.16
Cadaverine	ME530599	0.00	0.02	3.60	0.37
Ornithine	ME530720	0.07	0.08	3.48	0.37
DOPA	ME530621	0.13	3.08	0.17	0.20
Trimethylamine N-oxide	ME530769	0.10	1.90	NA	NA
Saccharopine	ME530743	0.39	2.26	1.10	0.30
Thymine	ME530763	0.49	2.41	0.45	0.65
Glucosamine	ME530634	0.84	2.20	0.32	0.64
N-Acetylhistidine	ME530697	1.14	2.26	0.23	0.37
2-Guanidinobenzimidazole	ME530802	0.62	NA	1.38	NA
Lysinamide	ME530676	0.97	NA	1.30	0.64
N-Acetylvaline	ME530700	1.13	0.29	1.80	0.79
Ala	ME530571	0.88	0.65	1.74	0.73
Pro	ME530730	0.85	0.44	1.99	0.72
Nicotinamide	ME530706	0.66	0.94	1.39	1.01
7,8-Dihydrobiopterin	ME530838	0.74	0.58	1.65	1.03
N-epsilon-Acetyllysine	ME530704	0.69	0.74	1.50	1.08
5-Methylthioadenosine	ME530833	0.90	0.25	1.54	1.31
Creatine	ME530606	1.17	0.40	1.45	0.98
Indole-3-acetate	ME530665	0.92	0.78	1.30	NA
Carnitine	ME530601	1.19	0.94	1.45	0.42
Gly	ME530638	1.24	0.99	1.38	0.38
Ile	ME530661	1.54	0.73	1.58	0.15
Tyr	ME530775	1.42	0.78	1.65	0.15
Leu	ME530673	1.31	0.77	1.79	0.13
Val	ME530781	1.30	0.73	1.76	0.21
Methionine sulfoxide	ME530682	1.13	0.72	1.77	0.38
Lys	ME530675	1.11	0.80	1.88	0.21
Phe	ME530723	1.14	0.85	1.80	0.22
N-Acetylglucosylamine	ME530696	0.53	1.03	2.09	0.35
Gly-Leu	ME530641	0.80	0.52	1.90	0.13
Met	ME530680	0.89	0.50	2.34	0.27
6-Aminohexanoate	ME530835	0.95	0.22	2.36	0.47
Choline	ME530604	0.87	0.37	2.21	0.55
2^-Deoxyinosine	ME530800	1.21	0.79	NA	NA
Carnosine	ME530602	1.32	0.74	NA	0.50
5-Methyl-2^-deoxycytidine	ME530830	0.68	1.32	NA	NA
Xanthine	ME530782	0.93	1.33	0.74	NA
Cysteine-glutathione disulphide	ME530614	1.71	1.11	0.15	0.47
Gln	ME530631	1.60	1.26	0.41	0.73
Gly-Gly	ME530640	2.24	0.99	0.41	0.36
Xanthosine	ME530784	1.98	0.99	0.36	0.56
Arg	ME530582	1.66	1.46	0.71	0.18
Trp	ME530773	1.70	1.12	0.73	0.45
His	ME530649	1.92	1.25	0.51	0.32
Ser	ME530749	2.00	1.09	0.65	0.27
2^-Deoxycytidine	ME530798	2.34	1.47	0.05	0.14
Asn	ME530585	2.27	1.65	0.04	0.04
Guanosine	ME530646	2.16	1.29	0.28	0.28
Thr	ME530761	2.20	1.36	0.28	0.16
2^-Deoxyguanosine	ME530799	1.87	1.34	0.15	0.24
Cytidine	ME530616	1.90	1.54	0.27	0.29
Hypotaurine	ME530658	2.52	0.85	0.15	0.27
Cystine	ME530615	2.36	1.09	0.52	0.03
Urocanate	ME530780	2.48	1.23	0.24	0.05
5-Oxoproline	ME530834	1.15	1.59	0.58	0.69
Thiamine	ME530759	1.02	1.72	0.78	0.47
1-Methyladenosine	ME530788	1.03	1.40	0.44	1.00
N-Acetylglucosamine	ME530695	1.05	1.30	0.84	0.81
o-Succinylhomoserine	ME530721	1.08	1.39	0.74	0.78
Uridine	ME530779	2.02	0.68	0.76	0.53
Betaine aldehyde	ME530595	1.68	0.68	0.86	0.67
Glu	ME530632	1.83	0.79	0.64	0.74
Asp	ME530586	1.46	0.88	0.73	0.93
o-Acetylcarnitine	ME530715	1.51	1.03	0.69	0.76
Inosine	ME530667	1.35	0.72	0.98	0.94
Uracil	ME530777	1.44	0.75	1.08	0.73
3-Methylhistidine	ME530815	0.28	1.04	0.28	2.40
5-Hydroxyindoleacetate	ME530825	0.09	0.28	0.08	2.63
Histamine	ME530650	0.25	0.58	0.24	2.92
Hydroxyproline	ME530656	0.03	0.35	0.12	3.50
Ala-Ala	ME530572	0.10	0.11	0.85	2.94
Spermidine	ME530753	0.10	0.08	0.86	2.96
N-Acetylputrescine	ME530699	0.11	0.17	1.83	1.89
NMN	ME530711	0.06	0.12	1.97	1.61
SDMA	ME530747	0.45	0.50	1.13	1.92
Homoserine	ME530655	0.50	0.24	1.22	2.04
N1-Acetylspermidine	ME530690	0.51	0.24	1.19	2.06
ADMA	ME530568	0.35	0.37	1.12	2.16
SAH	ME530744	0.26	0.34	1.13	2.10
SAM+	ME530745	0.51	0.15	1.42	1.92
Betaine	ME530594	0.44	0.38	1.48	1.70
N-Acetylornithine	ME530698	0.28	0.26	1.56	1.89
N8-Acetylspermidine	ME530694	0.25	0.18	1.17	2.40
Putrescine(1,4-Butanediamine)	ME530736	0.15	0.19	1.17	2.49
gamma-Butyrobetaine	ME530627	0.06	0.11	1.47	2.36
Pipecolate	ME530729	0.04	0.08	1.68	2.20
Spermine	ME530754	0.74	NA	0.68	1.51
Isopropanolamine	ME530671	0.04	0.03	0.81	1.92
4-(beta-Acetylaminoethyl)imidazole	ME530816	NA	NA	0.31	1.69
Pyridoxamine	ME530739	NA	NA	0.49	1.51
4-Hydroxymethylimidazole	ME530819	NA	NA	1.15	0.78
Thiamine monophosphate	ME530760	NA	NA	1.08	0.77
Tyramine	ME530776	NA	NA	0.37	1.21
Histidinol	ME530651	NA	NA	0.70	1.22
Adenine	ME530566	NA	NA	0.74	1.26
Alpha-Methylserine	ME530577	NA	NA	0.73	1.27
4-Amino-3-hydroxybutyrate	ME530817	NA	NA	0.65	1.18
Riboflavin	ME530742	NA	NA	0.65	1.12
3-Aminopropane-1,2-diol	ME530806	NA	NA	0.96	1.04
N-Methylalanine	ME530708	NA	NA	0.87	1.13
Cytosine	ME530617	NA	1.06	0.91	1.03
Guanine	ME530645	0.14	1.44	1.19	1.23
Pyridoxine	ME530741	NA	0.56	0.14	1.66
Agmatine	ME530569	0.15	0.67	0.53	2.01
Pyridoxal	ME530738	NA	0.79	0.43	1.78
Trimethylamine	ME530768	0.55	0.80	0.62	2.03
5-Aminolevulinate	ME530822	0.50	0.46	0.91	2.14
N1,N8-Diacetylspermidine	ME530689	0.48	0.56	0.80	1.90
beta-Ala	ME530590	0.22	0.82	1.15	1.80
5-Hydroxylysine	ME530826	0.42	1.18	0.74	1.66
GABA	ME530626	0.26	0.98	0.81	1.77
Diethanolamine	ME530619	0.44	0.91	1.04	1.21
Phosphorylcholine	ME530727	0.44	0.76	1.00	1.52
Urea	ME530778	0.98	0.99	1.15	0.88
Argininosuccinate	ME530584	0.83	1.09	0.92	1.17
Hypoxanthine	ME530659	0.88	0.88	1.08	1.16
N,N-Dimethylglycine	ME530687	0.91	0.94	0.94	1.21
7-Methylguanine	ME530840	0.71	0.95	0.92	1.42
Indole-3-ethanol	ME530666	0.83	0.91	0.82	1.44
1-Methylhistamine	ME530789	0.95	0.66	0.84	1.45
Indole-3-acetaldehyde	ME530663	0.92	0.71	0.94	1.42
Allantoin	ME530573	0.87	0.75	0.83	1.55
Serotonin	ME530750	0.84	0.77	0.71	1.60
N6,N6,N6-Trimethyllysine	ME530692	0.69	0.69	1.21	1.41
Guanidinoacetate	ME530643	0.73	0.88	1.13	1.25
Sarcosine	ME530746	0.72	0.80	1.16	1.32
Guanidinosuccinate	ME530644	0.86	0.51	1.28	1.35
Imidazole-4-acetate	ME530662	0.99	0.59	1.08	1.33
1-Methylnicotinamide	ME530790	1.25	0.60	0.66	1.49
Glutathione(ox)	ME530636	0.99	0.97	NA	1.16
gamma-Guanidinobutyrate	ME530630	1.10	0.87	0.38	1.66
Glycerophosphorylcholine	ME530639	1.08	1.19	0.36	1.37
Octopine	ME530717	NA	1.19	NA	0.74
Trigonelline	ME530767	NA	1.30	NA	0.70
Glucosaminate	ME530633	NA	0.68	NA	1.32
1,3-Diaminopropane	ME530791	NA	0.93	NA	1.27
N-alpha,N-alpha-Dimethylhistidine	ME530701	NA	0.87	NA	1.13
Proline betaine	ME530731	NA	0.79	NA	1.10
Adenosine	ME530567	0.41	1.51	0.56	1.52
alpha-Aminoadipate	ME530575	0.44	1.61	0.50	1.44
Mannosamine	ME530677	0.65	1.51	0.29	1.38
Thymidine	ME530762	0.75	1.35	0.46	1.43
Ophthalmate	ME530719	0.34	2.05	0.27	1.34
Anserine	ME530580	0.09	2.01	0.10	1.80
Creatinine	ME530607	0.21	1.78	0.25	1.76

Factors:

F1	Organ:Cecum \| Treatment:Germfree \| Diet:Fiber-free
F2	Organ:Cecum \| Treatment:Germfree \| Diet:Fiber-rich
F3	Organ:Cecum \| Treatment:Gnotobiote (14SM) \| Diet:Fiber-free
F4	Organ:Cecum \| Treatment:Gnotobiote (14SM) \| Diet:Fiber-rich

Data matrix