Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST003072)

(Analysis AN005030)

Metabolite	Structure	F1	F2	F3	F4	F5	F6	F7	F8	F9	F10	F11	F12	F13	F14
citrate	ME799750	0.62	0.77	0.70	0.87	0.79	0.83	3.39	1.38	1.25	0.73	4.15	3.67	0.32	0.41
glutamate	ME799764	0.29	0.62	0.28	0.43	0.73	0.38	4.29	2.07	1.60	1.94	3.17	3.30	1.73	2.07
citrulline	ME799751	0.62	0.53	0.48	0.53	0.81	0.74	2.23	1.57	2.97	0.94	0.98	1.99	2.32	2.17
INDOLE.3.ACETIC.ACID	ME799778	1.36	0.65	1.44	0.46	0.94	1.02	1.32	0.66	3.22	1.22	0.91	0.63	0.70	0.60
C5.Carnitines	ME799746	0.18	0.21	0.22	0.22	1.68	2.07	1.68	3.37	2.08	NA	NA	3.08	0.44	0.41
guanine	ME799770	0.09	0.08	0.06	0.07	3.03	1.10	3.07	3.00	2.08	1.10	1.92	2.35	0.17	0.16
malate	ME799786	0.86	0.72	0.67	0.65	1.18	1.12	2.72	2.34	1.21	1.50	1.59	1.96	0.31	0.45
Alpha.Ketoglutarate	ME799738	0.68	0.42	0.41	0.35	2.01	2.13	0.97	1.06	NA	0.62	1.60	1.02	0.38	0.41
asparagine	ME799742	0.34	0.43	0.29	0.36	2.08	2.29	NA	1.51	NA	0.33	0.36	0.97	0.88	0.79
betaine	ME799743	0.12	0.17	0.12	0.14	2.16	2.48	1.12	2.23	0.88	0.68	1.10	0.98	1.08	0.71
proline	ME799805	0.07	0.13	0.05	0.07	2.29	2.90	1.13	1.26	0.51	0.58	0.65	0.97	1.07	0.77
homocitrulline	ME799773	0.79	0.06	2.03	0.12	1.20	2.00	NA	NA	NA	NA	NA	NA	0.30	0.26
UMP	ME799819	0.15	0.31	0.11	0.13	2.35	1.31	NA	NA	NA	NA	NA	NA	0.04	0.08
carnitine	ME799747	0.24	0.28	0.22	0.24	2.54	2.86	0.08	0.14	0.12	0.20	0.11	0.24	1.23	0.83
Ureidosuccinic_acid	ME799821	0.19	0.26	0.16	0.20	2.32	1.99	NA	NA	NA	NA	NA	NA	0.81	0.56
gamma.glutamyl.alanine	ME799762	0.20	0.11	0.12	0.16	2.00	2.47	NA	NA	NA	NA	NA	NA	1.13	0.66
Butyrylcarnitine	ME799745	0.07	0.09	0.08	0.07	2.33	2.56	NA	NA	NA	NA	NA	NA	0.61	0.61
propionylcarnitine	ME799806	0.08	0.11	0.09	0.08	1.99	2.43	NA	NA	NA	NA	NA	NA	0.71	0.69
kynurenine	ME799782	0.10	0.05	0.07	NA	1.66	2.46	NA	NA	NA	NA	NA	NA	0.18	0.22
quinolinic_acid	ME799809	0.06	0.05	NA	0.18	1.52	1.78	NA	NA	NA	NA	NA	NA	0.04	0.06
cystine	ME799755	0.35	0.48	0.13	0.52	1.92	2.67	NA	NA	NA	NA	NA	NA	0.55	0.04
Pantothenate	ME799800	0.44	0.21	0.45	0.15	2.39	2.76	NA	NA	NA	NA	NA	0.16	0.02	0.02
uridine	ME799822	0.89	0.92	0.96	0.86	2.27	0.63	0.16	0.15	NA	0.10	NA	NA	0.83	0.97
cytidine	ME799756	0.89	0.60	0.82	0.62	2.21	0.79	NA	NA	NA	NA	NA	NA	0.86	0.78
biotin	ME799744	0.83	0.54	0.76	0.51	2.41	0.82	NA	NA	NA	NA	NA	NA	0.89	0.78
cytosine	ME799757	0.86	0.50	0.74	0.57	2.32	0.85	NA	NA	NA	NA	NA	NA	0.93	0.82
lysine	ME799785	0.72	0.51	0.52	0.58	2.01	2.22	0.29	0.66	NA	0.32	0.35	0.37	0.68	0.59
methionine	ME799788	0.64	0.80	0.41	0.76	1.85	2.52	0.07	0.04	0.02	0.05	0.24	0.05	0.88	0.76
alanine	ME799735	1.05	0.97	0.96	0.95	1.22	1.39	NA	0.34	NA	0.22	NA	NA	0.71	0.62
sarcosine	ME799811	0.91	1.02	1.01	1.01	1.29	1.48	0.33	0.36	NA	0.32	NA	0.51	0.76	0.65
X3.methyl.2.oxopentanoic_acid	ME799730	0.76	0.77	0.92	0.81	1.47	1.77	NA	NA	NA	0.50	NA	NA	0.32	0.32
fumarate	ME799761	0.92	0.85	0.71	0.69	1.57	1.51	NA	NA	NA	NA	NA	NA	0.40	0.56
N.acetylornithine	ME799793	0.69	0.78	0.60	0.77	1.49	1.69	NA	NA	NA	NA	NA	NA	0.78	0.59
pyruvate	ME799808	0.66	0.18	0.74	0.44	1.51	2.10	NA	NA	NA	NA	NA	NA	0.30	0.40
methylthioadenosine	ME799789	0.75	0.78	0.75	0.81	1.65	1.86	NA	NA	NA	NA	0.17	NA	0.24	0.22
S.Adenosyl.L.methionine	ME799810	0.64	0.67	0.51	0.54	1.73	2.14	NA	NA	NA	NA	NA	NA	0.05	0.08
valine	ME799823	0.25	0.31	NA	0.37	1.50	1.78	2.15	NA	NA	NA	NA	NA	1.25	1.11
phenylalanine	ME799801	0.36	0.78	0.34	0.67	1.61	2.19	0.65	0.51	0.40	0.33	0.68	0.77	1.19	1.32
tyrosine	ME799818	0.35	1.23	0.24	0.91	1.23	1.71	0.77	0.54	0.42	0.33	0.64	0.65	1.68	1.83
guanidinoacetate	ME799769	0.27	0.62	0.27	0.38	2.00	1.72	0.67	1.01	0.62	0.86	0.41	0.93	2.11	1.27
isoleucine	ME799781	0.32	0.50	0.30	0.40	1.30	2.08	1.30	1.31	0.57	0.59	1.13	1.11	1.79	1.70
p.aminobenzoate	ME799798	0.15	0.33	0.38	0.19	1.19	1.54	NA	NA	NA	NA	NA	NA	1.43	1.28
Homocysteine.sulfinic.acid	ME799774	0.47	0.62	0.61	0.64	0.99	1.51	NA	NA	NA	NA	NA	NA	2.16	1.88
tryptophan	ME799817	0.53	0.44	0.47	0.37	1.55	2.01	0.12	0.20	0.04	NA	0.26	0.22	2.17	2.39
leucine	ME799784	0.23	0.38	0.23	0.35	1.73	2.39	NA	NA	NA	NA	0.79	0.73	1.12	1.44
acetylcarnitine	ME799732	0.09	0.13	0.12	0.11	2.15	2.40	0.23	NA	NA	0.56	0.27	0.31	2.05	1.96
Pipecolate	ME799804	0.12	0.13	0.16	0.09	1.76	2.37	NA	NA	NA	NA	NA	NA	1.74	1.48
Methionine.sulfoxide	ME799787	0.81	1.31	1.03	1.02	0.94	1.13	0.54	2.50	0.40	0.81	0.92	1.83	0.60	0.40
hypoxanthine	ME799777	1.37	1.09	0.74	0.91	1.80	0.66	0.59	0.65	1.45	0.27	0.37	0.87	0.20	1.33
phosphocholine	ME799802	0.94	0.91	0.85	0.79	1.99	1.35	0.99	0.48	1.99	0.82	0.62	0.31	0.03	0.02
lactic_acid	ME799783	1.19	0.98	1.21	1.08	1.13	1.18	0.38	0.84	0.28	0.35	0.34	1.07	0.88	0.79
taurine	ME799813	0.86	1.04	0.83	1.22	1.19	1.34	0.35	0.48	0.35	1.37	0.53	0.36	1.18	0.89
cis.aconitate	ME799749	1.15	1.27	0.98	1.26	0.83	1.04	1.57	0.80	0.83	0.42	1.67	1.28	0.33	0.39
histidine	ME799772	0.54	1.02	0.60	1.05	1.23	1.54	1.56	0.66	0.41	0.53	0.98	1.47	1.07	0.80
adenine	ME799733	1.13	1.34	0.97	1.44	0.94	0.83	1.56	1.08	NA	1.13	1.18	NA	0.19	0.16
adenosine	ME799734	0.90	2.07	1.00	1.22	1.25	0.64	0.87	1.23	0.59	0.37	0.53	0.61	0.34	0.44
carnosine	ME799748	1.57	2.01	1.48	1.97	0.04	0.04	NA	NA	NA	NA	NA	2.12	0.09	0.06
anserine	ME799740	1.03	1.41	1.57	1.53	0.08	0.14	1.08	NA	NA	0.30	0.83	0.68	1.73	2.20
X3.hydroxybutyric_acid	ME799728	1.01	0.99	0.92	0.82	0.66	0.65	NA	NA	NA	NA	NA	NA	1.66	2.60
formyl_methionine	ME799760	1.03	1.26	0.98	1.23	0.46	0.58	NA	NA	NA	NA	NA	NA	1.57	1.84
Glucose.6.phosphate	ME799763	1.36	1.41	1.07	1.22	0.44	0.37	NA	NA	NA	NA	NA	NA	1.18	1.67
X2.hydroxybutyric_acid	ME799726	1.74	1.22	1.11	1.56	0.47	0.42	1.26	NA	NA	0.49	NA	1.17	0.69	0.83
pseudouridine	ME799807	1.42	0.74	1.39	0.91	1.25	1.64	NA	0.03	NA	0.12	0.09	0.04	0.40	0.30
threonine	ME799814	1.77	0.69	1.36	0.64	0.96	1.05	NA	NA	NA	NA	NA	NA	0.62	0.43
allantoin	ME799736	1.56	0.99	1.68	1.14	0.85	1.07	0.06	0.47	0.08	0.28	0.27	0.06	1.03	0.81
dCytidine	ME799758	1.55	0.92	1.83	1.07	1.01	1.17	0.10	0.10	0.12	0.34	0.08	0.08	0.80	0.57
X1.methylnicotinamide	ME799725	1.11	0.73	1.68	1.34	0.65	0.87	NA	NA	NA	NA	NA	NA	0.61	0.89
thymidine	ME799815	1.43	0.79	1.85	1.08	0.81	0.97	0.37	NA	NA	NA	NA	NA	0.31	0.27
THYMINE	ME799816	1.33	0.71	1.90	0.96	0.92	1.06	NA	NA	NA	NA	NA	NA	0.36	0.31
uracil	ME799820	1.10	1.01	1.41	0.87	1.51	0.82	NA	NA	NA	NA	NA	NA	0.21	0.19
X3.ureidopropionate	ME799731	1.44	1.25	1.61	1.44	0.69	0.58	NA	NA	NA	0.08	0.16	NA	1.07	0.19
creatine	ME799753	1.35	1.43	1.59	1.57	0.85	0.98	0.12	0.18	0.25	0.31	0.15	0.40	0.43	0.39
Glycerol.3.Phosphate	ME799766	1.55	1.46	1.23	1.53	0.45	0.54	NA	NA	NA	NA	NA	NA	0.51	0.48
GSSG	ME799768	1.54	1.76	1.17	1.22	0.81	0.43	NA	NA	NA	NA	NA	NA	0.43	0.07
O.phosphoethanolamine	ME799797	1.57	1.27	1.14	1.13	0.92	0.78	NA	NA	NA	NA	NA	NA	0.00	0.00
alpha.keto.isovalerate	ME799737	1.21	1.10	1.06	1.08	1.03	1.16	NA	NA	NA	NA	NA	NA	0.33	0.31
N.alpha.acetyllysine	ME799795	1.32	1.14	1.20	1.28	0.72	0.95	NA	NA	NA	NA	NA	NA	0.54	0.42
X3.hydroxyisobutyric_acid	ME799729	1.43	1.20	1.16	1.12	0.80	0.97	NA	NA	NA	NA	NA	NA	0.38	0.39
myo.inositol	ME799791	1.60	1.33	1.83	1.53	0.46	0.47	NA	NA	NA	NA	NA	NA	0.04	0.05
glutamine	ME799765	1.96	1.93	1.83	2.09	0.34	0.36	0.04	0.04	0.04	0.06	0.04	0.03	0.29	0.21
Mevalonate	ME799790	1.67	1.63	1.49	1.76	0.29	0.31	NA	NA	NA	NA	NA	NA	0.24	0.17
argininosuccinate	ME799741	1.79	2.01	1.34	1.73	0.26	0.16	NA	NA	NA	NA	NA	NA	0.08	0.11
N.acetylglutamine	ME799792	1.78	1.84	1.69	1.90	0.06	0.07	NA	NA	NA	NA	NA	NA	0.13	0.10
creatinine	ME799754	1.22	1.72	1.81	1.85	0.40	0.51	0.32	0.79	0.44	0.51	0.41	0.82	0.44	0.45
niacinamide	ME799796	1.29	1.49	2.22	2.68	0.22	0.24	0.18	0.32	0.26	0.27	0.28	0.34	0.29	0.38
indolelactate	ME799779	0.30	0.11	0.22	0.24	0.77	1.16	NA	2.71	NA	1.24	2.54	2.56	2.78	3.12
N.acetylphenylalanine	ME799794	0.55	0.95	0.61	0.90	0.53	0.69	1.84	1.67	NA	0.62	2.25	0.41	1.94	3.10
guanosine	ME799771	0.20	0.71	0.09	0.25	1.53	0.77	NA	NA	NA	0.51	NA	0.77	3.45	3.29
xanthine	ME799824	1.08	1.33	0.99	1.05	0.17	0.15	0.63	0.57	0.38	0.56	NA	0.62	2.42	4.00
Glycerophosphocholine	ME799767	0.33	0.58	0.31	0.45	0.52	0.52	0.31	0.53	0.21	0.28	0.19	0.43	5.55	5.54
inosine	ME799780	0.34	0.58	0.34	0.42	0.45	0.30	NA	0.61	NA	2.16	NA	1.85	5.30	3.66
palmitate	ME799799	0.35	0.36	0.63	0.15	0.10	0.11	0.95	2.42	4.51	8.70	6.98	2.44	0.82	0.68
succinate	ME799812	0.24	0.30	0.32	0.32	0.22	0.19	4.94	6.11	7.83	2.51	3.12	4.35	0.09	0.11
X2.hydroxyglutarate	ME799727	0.31	0.39	0.57	0.37	0.16	0.18	6.17	4.76	4.02	4.55	3.88	3.91	0.09	0.13

Factors:

F1	Sample type:Adult CSF \| Storage condition:Fresh \| Sex:Female
F2	Sample type:Adult CSF \| Storage condition:Fresh \| Sex:Male
F3	Sample type:Adult CSF \| Storage condition:Frozen \| Sex:Female
F4	Sample type:Adult CSF \| Storage condition:Frozen \| Sex:Male
F5	Sample type:Embryonic CSF \| Storage condition:Fresh \| Sex:Embryo
F6	Sample type:Embryonic CSF \| Storage condition:Frozen \| Sex:Embryo
F7	Sample type:Mock \| Storage condition:Fresh \| Sex:Embryo
F8	Sample type:Mock \| Storage condition:Fresh \| Sex:Female
F9	Sample type:Mock \| Storage condition:Fresh \| Sex:Male
F10	Sample type:Mock \| Storage condition:Frozen \| Sex:Embryo
F11	Sample type:Mock \| Storage condition:Frozen \| Sex:Female
F12	Sample type:Mock \| Storage condition:Frozen \| Sex:Male
F13	Sample type:Serum \| Storage condition:Fresh \| Sex:Male
F14	Sample type:Serum \| Storage condition:Frozen \| Sex:Male

Data matrix