Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST003083)

(Analysis AN005041)

Metabolite	Structure	F1	F2	F3	F4	F5	F6	F7	F8	F9
adenosine	ME801384	4.18	0.07	1.54	0.51	0.03	0.91	2.68	0.31	0.25
palmitate	ME801515	4.02	0.97	1.01	0.39	0.18	0.77	2.54	0.90	0.15
Glycerophosphocholine	ME801477	1.67	2.93	1.79	1.33	3.56	1.12	1.35	1.71	0.01
citrate	ME801491	NA	2.08	NA	0.97	2.25	0.78	NA	1.40	0.03
indolelactate	ME801419	NA	1.80	NA	1.05	1.40	0.81	NA	0.95	NA
malate	ME801624	NA	1.46	NA	1.16	1.93	1.15	NA	1.41	0.34
F6P_G1P	ME801612	NA	1.22	NA	1.07	2.32	0.56	NA	1.17	NA
UMP	ME801443	NA	1.03	NA	0.89	1.66	0.84	NA	1.12	NA
Methionine sulfoxide	ME801597	0.41	2.71	0.46	1.48	1.68	0.85	0.47	2.16	NA
3-hydroxybutyric_acid	ME801527	0.32	2.08	0.44	2.07	2.15	0.85	0.73	1.63	NA
lactic_acid	ME801598	0.16	2.46	0.14	1.73	2.81	0.93	0.16	1.94	0.12
niacinamide	ME801606	0.50	2.02	0.51	1.32	2.50	0.84	0.74	1.89	NA
Pyridoxal	ME801386	0.45	2.49	0.50	1.28	2.45	0.78	0.48	1.99	NA
glutamate	ME801517	1.32	1.49	1.69	2.10	2.00	0.91	1.06	1.37	0.15
Kynurenic Acid	ME801569	0.49	1.80	0.75	1.27	2.50	1.04	0.44	0.89	NA
methylthioadenosine	ME801503	0.53	1.48	0.49	1.28	3.29	0.99	0.37	1.23	NA
creatine	ME801547	1.48	1.48	1.57	1.03	1.91	1.04	NA	1.33	0.00
Pantothenate	ME801537	0.53	1.24	0.75	1.27	1.61	0.93	0.93	1.64	NA
tyrosine	ME801570	0.76	1.44	1.05	1.27	1.60	0.82	1.10	1.52	NA
guanosine	ME801554	0.93	1.83	0.86	0.99	1.80	0.82	0.57	1.41	NA
inosine	ME801448	0.77	2.32	0.74	1.10	2.17	0.82	0.64	1.56	NA
uric acid	ME801467	1.01	1.52	1.12	0.90	1.71	0.88	0.93	1.13	NA
Pipecolate	ME801616	0.90	1.60	0.97	0.80	2.13	0.88	0.98	1.15	NA
S-Adenosyl-L-Homocysteine	ME801504	0.82	1.45	1.07	0.71	1.94	0.92	0.95	1.02	NA
isoleucine	ME801562	0.78	1.48	1.04	1.07	2.13	0.74	1.15	1.40	NA
valine	ME801422	0.87	1.49	1.12	1.01	2.39	0.87	1.21	1.52	NA
tryptophan	ME801513	0.90	1.87	1.03	1.10	2.45	0.75	1.05	1.46	0.00
biotin	ME801375	0.88	1.87	0.96	1.24	2.11	0.78	0.84	1.35	NA
cytidine	ME801394	0.97	1.98	1.04	1.34	2.27	0.84	0.90	1.44	0.00
adenine	ME801376	1.27	1.27	0.90	1.52	1.30	1.05	0.50	1.33	NA
xanthine	ME801580	0.72	1.08	0.83	0.92	1.17	1.15	0.66	0.94	NA
NAD+	ME801418	0.61	0.87	2.10	1.03	NA	1.03	0.57	0.18	NA
sorbitol	ME801429	NA	1.37	2.10	0.49	0.56	0.84	1.00	0.52	NA
3-hydroxyisobutyric_acid	ME801483	1.46	NA	1.17	0.03	NA	0.90	1.17	NA	NA
aspartate	ME801526	0.98	0.30	1.81	NA	NA	0.89	1.09	0.47	NA
hypotaurine	ME801479	0.86	NA	1.48	NA	0.10	0.96	0.93	NA	NA
argininosuccinate_unc	ME801614	1.01	NA	1.50	0.34	NA	0.76	1.28	NA	NA
cystine	ME801466	0.99	NA	1.71	0.02	NA	0.64	1.58	NA	NA
S-Adenosyl-L-methionine	ME801502	1.57	1.16	1.47	0.53	NA	0.77	1.54	NA	NA
glycine_13C2-15N	ME801585	1.99	0.58	1.89	0.16	0.42	0.81	1.88	0.34	0.88
ascorbate_unc	ME801497	1.60	NA	1.43	NA	0.01	0.85	1.57	NA	0.70
beta-alanine	ME801535	1.57	0.65	1.33	0.26	NA	0.88	1.58	0.51	0.64
glycerate	ME801428	2.45	0.01	2.06	0.04	0.10	0.76	2.36	0.06	0.95
glucose	ME801430	2.79	0.46	1.43	0.21	0.46	0.72	2.52	0.46	NA
thymidine	ME801571	2.21	0.51	1.68	0.29	0.37	0.73	2.53	0.41	NA
allantoin	ME801398	2.19	0.33	2.01	0.17	0.31	0.79	2.22	0.28	NA
uridine	ME801482	2.24	0.39	2.27	0.28	0.41	0.73	2.04	0.32	NA
3-ureidopropionate	ME801476	2.00	0.03	2.15	0.01	0.02	0.81	2.05	0.01	0.01
choline	ME801509	1.77	NA	1.68	0.00	0.00	0.75	1.72	NA	0.00
asymmetric dimethylarginine	ME801438	1.40	0.38	2.01	0.33	0.63	0.74	2.29	0.49	NA
glycine	ME801377	1.52	0.43	2.58	0.37	0.69	0.83	1.92	0.37	0.13
phosphocholine	ME801423	2.14	0.65	2.46	0.45	0.73	0.71	1.80	0.43	NA
hypoxanthine	ME801567	1.39	NA	1.27	1.60	0.18	1.00	1.04	0.98	NA
2-hydroxybutyric_acid	ME801399	0.88	NA	1.16	0.36	NA	0.61	1.81	1.78	NA
homocitrulline	ME801380	0.88	NA	1.07	NA	NA	0.75	1.45	1.02	NA
methionine-13C5-15N	ME801511	1.66	0.63	1.44	0.54	3.35	0.73	1.54	0.59	1.02
Glucose 6-phosphate	ME801589	1.31	0.56	1.58	0.49	2.62	0.68	1.00	1.13	NA
methionine	ME801555	1.41	0.56	1.58	0.66	3.05	0.71	1.59	0.64	NA
formyl_methionine	ME801608	2.00	0.11	2.08	0.35	1.94	0.22	2.22	0.33	NA
proline	ME801439	0.70	0.98	1.35	1.06	1.87	0.75	1.25	1.24	NA
taurine	ME801434	0.76	0.84	1.47	1.06	1.21	0.76	1.40	1.20	NA
threonine	ME801557	0.81	0.72	1.28	0.68	1.43	0.76	1.78	1.20	NA
citrulline	ME801431	1.87	1.36	2.20	0.77	1.81	1.00	1.91	1.01	0.01
betaine	ME801544	1.64	1.52	1.78	1.07	1.75	1.05	1.71	1.26	0.00
ornithine	ME801552	1.41	1.16	2.20	1.03	1.65	0.99	1.60	1.14	0.01
anserine	ME801452	1.59	1.37	1.66	1.16	1.90	0.63	1.13	0.82	NA
kynurenine	ME801420	1.16	1.34	1.47	1.03	2.32	0.68	1.18	1.12	NA
dimethylglicine	ME801393	1.33	1.14	1.20	0.78	2.01	0.77	1.22	1.08	NA
cytosine	ME801402	1.36	1.46	1.45	0.95	1.78	0.69	1.26	1.04	NA
uracil	ME801578	1.46	1.46	1.26	0.95	1.82	0.85	1.02	1.15	NA
pseudouridine_unc	ME801411	1.18	1.33	1.06	0.74	1.21	0.95	1.28	1.16	NA
Glycerol 3-Phosphate	ME801545	1.34	1.30	1.42	0.69	1.15	0.75	1.37	0.99	NA
N-acetylphenylalanine	ME801620	1.40	1.30	1.42	0.85	1.29	0.78	1.60	1.01	NA
leucine	ME801498	1.14	1.00	1.46	1.02	1.35	0.73	1.47	1.06	NA
O-phosphoethanolamine	ME801462	1.27	1.31	1.50	1.07	1.42	0.70	1.27	1.16	NA
guanine	ME801379	1.76	1.49	1.66	0.83	1.52	0.76	1.50	1.10	0.00
glutamine	ME801546	1.46	1.34	1.65	0.92	1.56	0.85	1.72	1.20	0.00
alanine	ME801461	1.34	1.16	1.57	0.76	1.63	0.83	1.51	1.08	0.00
sarcosine	ME801424	1.34	1.15	1.57	0.76	1.63	0.83	1.51	1.08	0.00
lysine	ME801573	1.01	0.90	1.50	0.92	1.11	0.72	1.46	NA	NA
guanidinoacetate	ME801594	1.07	0.47	2.47	0.66	0.92	0.71	1.65	0.53	NA
propionylcarnitine	ME801458	1.38	0.57	2.13	0.67	0.66	0.84	1.42	0.49	NA
Butyrylcarnitine	ME801454	1.55	0.74	2.05	0.73	0.91	0.76	1.55	0.57	NA
C5 Carnitines	ME801536	1.50	0.80	2.00	0.76	0.78	0.80	1.44	0.55	NA
phenylalanine	ME801529	1.18	0.85	1.61	0.78	0.93	0.80	1.74	1.00	NA
3-methyl-2-oxopentanoic_acid	ME801459	1.55	0.73	1.69	0.67	1.28	0.75	1.76	0.82	0.01
hydroxyproline_gammaALA	ME801385	1.45	0.91	1.77	0.66	1.26	0.87	1.82	0.94	0.01
acetylcarnitine	ME801457	1.66	0.97	1.97	0.82	1.23	0.93	1.47	0.71	NA
carnitine	ME801374	1.42	0.84	1.99	0.70	1.11	0.82	1.68	0.71	0.00
N-alpha-acetyllysine	ME801446	1.67	0.83	1.53	0.42	1.10	0.89	1.68	0.65	0.11
saccharopine_unc	ME801465	1.71	0.81	1.62	0.28	1.18	0.88	1.38	0.54	NA
carnosine	ME801468	1.58	1.08	1.91	0.57	1.56	0.71	1.40	0.74	NA
phosphocreatine	ME801601	1.98	1.26	1.79	0.61	1.13	0.70	1.47	0.72	NA
quinolinic_acid	ME801415	1.97	1.09	1.85	0.53	1.28	0.77	1.58	0.66	0.05
orotate	ME801392	2.13	0.90	2.05	0.69	1.13	0.90	2.30	0.78	0.02
arginine	ME801427	1.62	0.96	2.27	0.83	1.29	0.94	1.87	0.91	0.00
histidine	ME801416	1.53	0.70	2.36	0.88	1.17	0.83	2.11	0.86	0.01
asparagine	ME801450	1.36	0.68	2.22	0.52	1.02	0.71	2.41	0.81	0.01
serine	ME801492	0.96	0.83	2.17	0.60	1.10	0.79	2.18	0.84	0.02
creatinine	ME801499	1.27	NA	1.17	0.74	1.72	0.87	1.20	1.06	NA
2-oxoadipate	ME801622	1.00	0.85	0.92	0.44	1.02	1.18	1.02	0.78	0.84
alpha-keto-isovalerate	ME801617	1.31	0.40	1.39	0.42	0.81	0.98	1.44	0.62	NA
THYMINE	ME801584	0.92	0.38	1.19	0.24	1.19	1.36	1.24	0.46	0.09
histidine-13C6-15N3	ME801388	2.36	1.46	1.94	0.67	0.17	0.59	2.25	0.63	2.06
aspartate-13C6-15N4	ME801579	0.88	1.43	0.79	0.81	1.50	0.80	0.88	1.15	1.06
"glutamate-13C5,15N"	ME801472	0.82	1.46	0.77	0.81	1.47	0.80	0.94	1.19	1.09
proline-13C5-15N	ME801369	0.98	1.51	0.86	0.68	1.72	0.76	0.90	1.06	1.38
valine-13C5-15N	ME801412	0.89	1.52	0.77	0.73	1.70	0.73	0.85	1.04	1.49
phenylalanine-13C9-15N	ME801391	0.64	1.59	0.55	0.80	1.84	0.76	0.60	1.02	1.56
Isoleucine-13C6-15N	ME801565	0.77	1.56	0.65	0.75	1.73	0.73	0.69	1.07	1.75
tyrosine-13C9-15N	ME801514	0.84	1.54	0.72	0.66	1.63	0.70	0.76	1.03	1.61
cystine-13C6-15N2	ME801525	1.61	1.86	1.39	0.68	1.73	0.53	1.42	1.22	2.00
Itaconic Acid	ME801387	1.58	1.22	1.29	0.71	1.30	0.71	1.53	0.85	1.33
GSSG-13C4_15N2	ME801435	1.61	0.96	1.52	0.46	0.86	0.74	1.47	0.70	1.38
serine-13C3-15N	ME801409	1.71	0.99	1.53	0.34	1.04	0.66	1.57	0.62	1.70
arginine-13C6-15N4	ME801516	1.58	0.92	1.25	0.36	0.99	0.72	1.34	0.63	2.62
leucine-13C6-15N	ME801538	1.12	1.20	0.91	0.70	1.32	0.71	1.00	0.89	1.77
threonine-13C4-15N	ME801421	1.42	1.21	1.03	0.47	1.19	0.59	1.09	0.76	2.32
lysine-13C6-15N2	ME801400	1.36	1.24	1.18	0.60	1.22	0.62	1.20	0.88	2.16
alanine-13C3-15N	ME801496	1.26	1.31	1.04	0.50	1.15	0.65	1.07	0.82	2.14
L-ALANINE_13C3	ME801539	1.26	1.31	1.04	0.50	1.15	0.65	1.07	0.82	2.14

Factors:

F1	Sample source:polyI C -3 swap \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):polyIC \| Collection Time:48 hours \| Additional Adjustments:-
F2	Sample source:polyI C 3 swap \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):polyIC \| Collection Time:48 hours \| Additional Adjustments:diluted to lowest concentration in the set
F3	Sample source:polyI C \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):polyIC \| Collection Time:48 hours \| Additional Adjustments:-
F4	Sample source:polyI C \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):polyIC \| Collection Time:48 hours \| Additional Adjustments:diluted to lowest concentration in the set
F5	Sample source:polyI C \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):polyIC \| Collection Time:- \| Additional Adjustments:-
F6	Sample source:pool \| Developmental Timepoint:- \| Maternal Treatment (injection):- \| Collection Time:- \| Additional Adjustments:-
F7	Sample source:saline \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):saline \| Collection Time:48 hours \| Additional Adjustments:-
F8	Sample source:saline \| Developmental Timepoint:E14.5 \| Maternal Treatment (injection):saline \| Collection Time:48 hours \| Additional Adjustments:diluted to lowest concentration in the set
F9	Sample source:technical mock no CSF \| Developmental Timepoint:- \| Maternal Treatment (injection):- \| Collection Time:- \| Additional Adjustments:-

Data matrix