Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST003603)

(Analysis AN005919)

Metabolite	Structure	F1	F2	F3	F4	F5	F6	F7	F8	F9
Maltose	ME934314	0.48	0.71	0.72	1.10	0.92	0.51	0.66	3.15	0.75
UMP	ME934294	1.14	0.77	0.90	0.24	0.89	1.27	0.85	2.62	0.33
Fumarate	ME934320	1.35	0.73	0.91	0.17	0.60	0.78	0.69	3.44	0.34
Malate	ME934321	1.48	0.67	0.86	0.13	0.64	0.78	0.73	3.36	0.35
Malate 13C2	ME934371	NA	0.74	NA	0.08	NA	0.04	NA	3.30	0.20
Argininosuccinate	ME934334	0.81	0.46	0.67	0.62	0.34	0.29	0.41	4.65	0.52
Malate 13C3	ME934372	NA	0.09	NA	0.05	NA	0.03	NA	4.77	0.07
Itaconate 13C1	ME934365	NA	2.06	NA	0.18	NA	0.09	NA	1.34	0.17
Itaconate 13C4	ME934368	NA	2.02	NA	0.44	NA	0.25	NA	1.96	0.34
Pyruvate 13C1	ME934374	NA	0.33	NA	0.43	NA	1.08	NA	1.66	1.53
AMP 13C2	ME934378	NA	1.37	NA	0.05	NA	1.12	NA	1.37	0.45
Lactate 13C1	ME934375	NA	1.85	NA	0.85	NA	0.43	NA	0.51	0.72
Itaconate 13C3	ME934367	NA	0.84	NA	1.11	NA	0.86	NA	1.43	0.77
2-Oxoglutarate 13C5	ME934364	NA	1.01	NA	0.55	NA	1.01	NA	1.31	1.12
2-Oxoglutarate 13C3	ME934363	NA	1.29	NA	0.83	NA	0.83	NA	0.80	1.26
Succinate 13C4	ME934369	NA	1.17	NA	0.96	NA	1.11	NA	0.85	0.91
ADP 13C1	ME934376	NA	1.14	NA	1.11	NA	1.02	NA	0.89	0.85
ADP 13C2	ME934377	NA	1.20	NA	1.03	NA	1.00	NA	0.92	0.86
D-Glucose	ME934308	1.46	0.74	0.84	1.14	0.49	0.48	0.68	1.08	2.09
2-Oxoglutarate	ME934319	1.27	1.23	0.83	0.13	2.26	0.74	1.76	0.34	0.15
Ascorbate	ME934329	1.06	0.95	0.83	0.07	1.84	0.94	1.73	1.44	0.13
N-Methylethanolamine phosphate	ME934345	1.68	0.93	0.90	0.15	0.36	0.89	1.92	1.87	0.30
D-Fructose 1-6-bisphosphate	ME934309	1.70	0.91	1.56	NA	0.17	0.44	0.64	1.05	0.34
D-Glyceraldehyde 3-phosphate/Glycerone phosphate	ME934310	1.96	1.14	2.07	0.13	0.43	0.52	1.93	0.69	0.13
6-Phospho-D-gluconate	ME934324	NA	0.75	0.42	1.12	0.79	0.99	1.32	1.43	0.96
ADP	ME934291	0.68	2.02	0.67	1.23	0.18	1.79	0.70	1.12	0.62
Lactate	ME934313	0.79	2.28	0.63	0.81	0.48	0.99	1.29	0.93	0.80
Phosphocreatine	ME934340	0.82	2.13	1.09	0.83	0.46	0.71	0.94	1.48	0.53
1-4-beta-D-Xylan	ME934337	1.07	1.58	0.83	0.28	1.14	2.15	1.22	0.65	0.09
2-Hydroxyglutarate/Citramalate	ME934323	1.06	1.65	0.87	0.15	1.32	1.58	1.59	0.66	0.11
Dihydrofolate	ME934333	1.02	1.75	0.81	0.44	NA	1.18	1.25	0.74	0.45
Itaconate	ME934361	1.61	1.82	1.05	0.21	0.54	1.43	1.55	0.57	0.22
2/3-Phospho-D-glycerate	ME934311	0.64	1.10	0.57	0.27	0.83	1.94	0.81	2.30	0.52
AMP	ME934292	0.89	1.13	0.82	0.49	0.56	2.01	0.90	1.58	0.62
Taurine	ME934342	0.97	1.07	0.85	0.43	0.98	1.88	0.99	1.43	0.39
ADP-D-ribose	ME934305	0.78	0.80	0.35	0.70	0.99	1.52	1.78	1.25	0.82
3-Phosphonooxypyruvate	ME934332	1.10	0.95	0.98	0.53	1.06	1.06	1.41	1.14	0.78
Urate	ME934300	1.33	0.73	0.47	0.47	1.12	1.19	1.47	1.43	0.77
UDP-glucose	ME934304	0.81	0.86	0.81	0.99	0.83	1.16	0.64	1.85	1.05
D-Ribose	ME934316	1.08	0.34	0.78	1.66	1.03	0.54	1.08	1.10	1.39
Nicotinate ribonucleotide	ME934303	1.07	0.76	1.29	1.08	1.14	0.64	0.94	0.73	1.36
5-6-Dihydrothymine	ME934302	1.10	0.55	0.89	1.33	1.01	0.92	0.98	1.02	1.19
5-6-Dihydrouracil	ME934341	1.28	0.80	0.92	1.03	0.87	0.98	1.23	0.96	1.02
Oxaloacetate	ME934322	0.77	1.51	0.79	0.92	1.27	0.81	0.74	1.25	0.94
Heptanoic acid	ME934346	1.01	1.21	1.11	1.00	0.65	1.02	0.91	1.25	0.85
3^,5^-Cyclic IMP	ME934301	1.07	1.13	0.92	1.02	0.66	1.01	0.97	1.04	1.18
Phosphate	ME934306	1.14	1.23	0.85	0.80	0.75	1.09	1.04	1.17	0.92
Diphosphate	ME934307	1.14	1.32	0.74	0.92	0.65	1.21	0.99	1.14	0.89
IDP	ME934295	1.07	1.36	0.77	0.95	0.56	1.16	1.00	1.15	0.98
Nonanoic acid (pelargonic acid)	ME934348	1.12	1.04	1.12	1.23	0.96	1.04	0.75	0.91	0.83
Octanoic acid (caprylic acid)	ME934347	1.10	0.93	1.38	1.34	0.77	1.15	0.69	0.94	0.70
Tetradecenoic acid (myristoleic acid)	ME934353	0.85	0.85	1.23	1.00	1.24	1.11	0.83	0.94	0.95
Decanoic acid (capric acid)	ME934349	0.92	0.84	0.94	1.18	0.92	1.48	0.92	0.98	0.82
Octadecanoic acid (stearic acid)	ME934352	0.95	0.86	0.96	1.16	1.12	1.19	0.99	0.95	0.81
UDP-N-acetyl-D-glucosamine	ME934338	1.31	0.79	1.43	0.86	0.95	1.11	0.83	0.95	0.78
Glycerol 3-phosphate	ME934343	1.07	1.03	1.56	0.51	0.78	1.33	0.94	1.25	0.55
Hexadecenoic acid (Palmitoleic acid)	ME934354	1.14	1.07	1.43	0.80	0.75	1.04	0.93	1.17	0.67
Hexadecanoic acid (palmitic acid)	ME934351	1.03	1.12	1.27	0.88	0.79	1.10	0.72	0.89	1.21
Pyruvate	ME934312	0.95	1.04	1.48	0.74	1.09	0.80	0.92	1.03	0.94
Arachidonic acid (Eicosatetraenoic acid)	ME934358	2.38	0.60	1.01	0.72	1.20	1.01	1.12	0.64	0.32
a-Linolenic acid (Octadecatrienoic acid)	ME934357	1.65	1.37	0.96	0.69	1.21	0.54	0.88	0.61	0.97
Docosahexaenoic acid	ME934359	1.66	1.23	0.84	0.79	1.23	0.80	1.05	0.83	0.57
Octadecenoic acid (Oleic acid)	ME934355	1.59	1.08	1.01	0.45	0.69	1.29	0.90	1.12	0.86
Tetradecanoic acid (myristic acid)	ME934350	1.75	0.93	1.05	0.96	0.90	0.98	0.74	0.97	0.71
Sedoheptulose 1/7-phosphate	ME934326	1.43	1.76	1.53	0.14	0.84	0.98	1.20	0.90	0.22
alpha-D-Ribose 1-phosphate	ME934327	1.50	1.10	1.34	0.40	1.01	1.03	1.23	0.95	0.45
Citrate	ME934318	1.49	1.38	1.48	0.35	0.62	0.89	1.24	1.05	0.51
D-Glucono-1-5-lactone 6-phosphate	ME934325	1.15	0.99	1.28	0.51	0.67	0.86	1.48	0.63	1.10
Linoleic acid ((9Z,12Z)-Octadecadienoic acid)	ME934356	1.47	0.98	1.30	0.81	0.62	0.81	1.35	0.81	0.86
Mannitol/Sorbitol	ME934315	1.73	0.98	1.09	0.93	0.72	0.66	1.33	0.77	0.80
D-Arabitol	ME934317	1.89	0.99	1.28	0.47	0.53	0.77	1.72	0.84	0.50
(S)(+)-Allantoin	ME934299	1.71	1.13	1.28	0.43	0.71	0.80	1.45	0.81	0.67
Eicosapentaenoic acid	ME934360	1.49	0.54	1.46	0.58	1.51	1.66	1.00	0.43	0.35
GMP	ME934293	1.54	0.72	1.15	0.21	0.88	1.31	1.25	1.75	0.19
Xanthine	ME934298	1.39	0.68	0.88	0.41	1.06	1.46	1.45	1.33	0.34
alpha-D-Glucosamine 1-phosphate	ME934336	1.30	0.90	1.16	0.60	1.32	1.18	1.08	1.17	0.29
Glutathione	ME934328	1.50	0.76	1.17	0.43	1.10	1.45	0.99	1.22	0.37
CMP-N-acetylneuraminate	ME934339	1.55	0.80	1.07	0.35	0.84	1.12	1.77	1.06	0.43
N-Acetylneuraminate	ME934335	1.89	0.68	1.17	0.23	1.07	0.85	1.58	1.17	0.36
IMP	ME934296	1.50	0.73	1.45	0.19	1.20	1.73	1.09	0.93	0.17
Inosine	ME934297	1.75	0.68	1.69	0.20	1.14	1.29	1.28	0.84	0.12
Dehydroascorbate	ME934330	1.69	0.73	1.41	0.22	0.94	1.36	1.33	1.14	0.19
Ethanolamine phosphate	ME934344	1.78	0.70	1.42	0.23	0.95	1.14	1.48	1.07	0.22

Factors:

F1	Timepoint (h):18 \| LPS treatment (ng/ml):0 \| E coli viability:dead \| Multiplicity of infection:25 \| well vs insert source:NA
F2	Timepoint (h):18 \| LPS treatment (ng/ml):0 \| E coli viability:dead \| Multiplicity of infection:50 \| well vs insert source:well
F3	Timepoint (h):18 \| LPS treatment (ng/ml):0 \| E coli viability:live \| Multiplicity of infection:25 \| well vs insert source:NA
F4	Timepoint (h):18 \| LPS treatment (ng/ml):0 \| E coli viability:NA \| Multiplicity of infection:NA \| well vs insert source:insert
F5	Timepoint (h):18 \| LPS treatment (ng/ml):0 \| E coli viability:NA \| Multiplicity of infection:NA \| well vs insert source:NA
F6	Timepoint (h):18 \| LPS treatment (ng/ml):0 \| E coli viability:NA \| Multiplicity of infection:NA \| well vs insert source:well
F7	Timepoint (h):18 \| LPS treatment (ng/ml):500 \| E coli viability:NA \| Multiplicity of infection:NA \| well vs insert source:NA
F8	Timepoint (h):6 \| LPS treatment (ng/ml):0 \| E coli viability:dead \| Multiplicity of infection:50 \| well vs insert source:well
F9	Timepoint (h):6 \| LPS treatment (ng/ml):0 \| E coli viability:NA \| Multiplicity of infection:NA \| well vs insert source:insert

Data matrix