Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST003604)

Reversed phase NEGATIVE ION MODE (Analysis AN005921)

Metabolite	Structure	F1	F2	F3	F4	F5	F6	F7	F8	F9	F10
Maltose	ME934561	0.22	0.21	7.82	0.25	0.46	0.46	0.39	0.40	0.22	0.36
Citrate	ME934565	1.06	0.46	0.71	0.10	6.83	0.94	0.10	0.07	0.17	0.10
Mannitol	ME934562	2.88	0.09	0.21	0.14	0.39	0.33	0.12	0.47	0.31	5.98
Adenosine 13C5	ME934631	0.41	0.26	0.35	NA	0.26	0.54	0.19	0.21	0.36	4.34
Fumarate	ME934569	1.42	0.68	0.97	0.47	0.40	0.60	1.19	0.50	0.75	3.35
D-Arabitol	ME934564	0.05	0.04	2.23	0.45	0.18	0.20	3.06	2.82	0.57	1.36
Fumarate 13C4	ME934627	0.03	0.17	2.28	0.30	0.14	0.18	1.90	1.14	0.24	1.65
Malate 13C4	ME934628	NA	NA	2.18	0.40	0.04	0.14	2.28	0.82	0.34	1.81
5-L-Glutamyl-taurine	ME934579	0.16	0.53	4.11	1.28	0.11	0.14	1.65	1.56	0.19	0.11
Pantothenol	ME934590	0.38	0.41	4.07	0.11	0.97	0.51	2.32	0.70	0.63	0.49
Citrate 13C1	ME934618	NA	0.58	3.33	0.45	0.57	1.77	0.80	0.75	0.84	0.41
2/3-Phospho-D-glycerate	ME934558	0.84	0.92	3.54	0.23	1.23	0.73	0.88	0.28	0.83	0.61
Lactate	ME934560	0.46	0.91	2.79	0.24	1.01	1.24	1.43	0.33	0.57	1.10
Citrate 13C3	ME934620	0.23	0.64	4.32	0.47	1.60	0.56	0.44	0.32	0.38	0.51
Glutathione 13C10	ME934637	0.55	0.29	4.05	0.25	2.22	1.85	0.23	0.20	0.31	0.21
Citrate 13C2	ME934619	0.89	0.41	2.58	0.36	3.60	0.63	0.36	0.24	0.62	0.44
Citrate 13C4	ME934621	0.34	0.22	2.55	0.33	4.01	0.67	0.34	0.56	0.29	0.32
D-Glucono-1-5-lactone 6-phosphate	ME934572	0.35	0.44	1.37	0.36	1.57	5.39	0.26	0.15	0.30	0.38
D-Erythrose 4-phosphate	ME934573	0.44	0.39	1.01	0.13	0.84	3.82	0.61	0.44	0.27	0.18
D-Glyceraldehyde 3-phosphate/Glycerone phosphate	ME934557	0.41	0.43	1.33	0.41	2.43	3.81	0.50	0.40	0.41	0.44
IMP	ME934548	0.37	0.81	2.02	0.13	1.44	2.47	1.32	0.25	0.49	0.88
Uracil	ME934547	0.69	0.75	1.83	0.57	0.88	2.81	0.76	0.66	0.72	0.60
Sedoheptulose 1-phosphate	ME934574	0.23	0.40	2.89	0.34	2.01	3.35	0.51	0.16	0.27	0.45
sn-glycero-3-Phosphoethanolamine	ME934599	1.02	0.42	2.43	0.18	2.82	2.39	0.27	0.19	0.54	0.32
Ribose phosphate 13C5	ME934636	0.07	0.06	0.36	0.07	1.67	2.10	1.39	0.51	1.27	1.10
AMP 13C10	ME934630	NA	0.00	0.11	0.02	1.41	1.56	0.50	0.97	1.15	2.04
Adenine 13C5	ME934632	NA	0.03	0.52	0.15	0.87	1.28	0.63	0.71	1.89	1.99
ADP 13C10	ME934629	0.07	NA	NA	0.05	0.60	0.87	0.21	0.71	1.62	2.26
1-4-beta-D-Xylan	ME934585	1.89	1.31	0.48	0.51	0.51	0.66	0.87	0.57	1.80	1.09
2-Hydroxyglutarate/Citramalate	ME934571	2.17	1.08	0.93	0.25	0.96	1.25	0.82	0.32	1.29	0.85
ADP	ME934544	2.46	1.25	0.25	0.26	1.36	0.69	0.63	0.50	1.36	1.00
2-Oxoglutarate	ME934566	3.16	1.41	0.28	0.18	0.51	0.55	1.22	0.25	1.16	0.89
Ascorbate	ME934576	2.43	1.91	0.29	0.03	0.32	1.15	0.57	0.04	0.89	1.46
L-Selenomethionine	ME934593	1.58	1.17	0.85	1.80	1.08	0.41	0.33	0.66	1.06	0.89
CMP-N-acetylneuraminate	ME934587	1.57	1.19	0.51	0.06	1.31	1.82	0.35	0.16	1.05	1.31
N-Acetylneuraminate	ME934581	1.37	1.21	0.19	0.02	1.12	2.19	0.42	0.34	0.96	1.96
N-Glycoloyl-neuraminate	ME934582	1.49	0.87	0.18	0.13	0.97	1.81	0.36	0.85	1.28	1.78
Pyruvate	ME934559	1.02	0.79	1.79	0.68	0.70	0.87	2.12	0.95	0.54	0.75
gamma-L-Glutamyl-L-cysteine	ME934578	1.57	0.96	0.77	0.14	1.79	1.00	0.99	0.34	1.36	1.12
Sedoheptulose 1-phosphate 13C7	ME934635	0.92	0.87	0.76	0.27	2.06	1.78	0.78	0.68	1.10	0.91
Eicosapentaenoic acid	ME934615	0.79	1.29	0.61	0.29	1.84	1.54	1.27	0.48	0.63	0.96
Docosahexaenoic acid	ME934614	0.97	1.19	0.74	0.20	1.94	1.60	0.98	0.38	0.95	0.85
Docosapentaenoic acid ((7Z-10Z-13Z-16Z-19Z)-Docosa-7-10-13-16-19-pentaenoic acid)	ME934617	0.85	1.35	0.49	0.22	1.90	1.76	0.90	0.39	0.90	0.89
N-Methylethanolamine phosphate	ME934597	1.58	0.63	2.25	0.17	1.70	1.73	0.50	0.59	0.68	0.54
UDP-glucose	ME934552	1.45	0.75	1.64	0.13	0.96	1.86	0.61	0.30	1.21	1.34
UDP-N-acetyl-D-glucosamine	ME934586	1.56	0.87	1.20	0.10	1.35	1.96	0.65	0.32	1.21	0.90
UMP	ME934546	1.25	0.64	1.25	0.06	1.45	2.34	0.80	0.46	1.33	0.77
Xanthine	ME934549	0.81	0.86	1.55	0.11	1.60	1.66	1.51	0.43	0.95	0.65
Ethanolamine phosphate	ME934596	1.30	1.01	1.29	0.26	1.31	1.45	0.77	0.66	1.04	0.90
Tetradecenoic acid (myristoleic acid)	ME934608	1.04	0.89	1.36	0.65	1.64	1.31	0.90	0.65	0.88	0.80
trans-4-Hydroxy-L-proline	ME934589	1.13	0.81	1.49	0.30	1.57	1.40	0.94	0.64	1.09	0.83
D-Glucose	ME934556	0.98	0.64	1.47	0.66	1.69	1.44	0.71	0.71	0.84	1.23
Succinate 13C4	ME934626	0.94	0.80	1.27	0.94	1.56	1.20	0.90	0.86	0.67	0.94
4-Pyridoxate	ME934551	1.06	0.80	1.91	0.13	1.65	1.52	0.78	0.23	0.93	0.98
Sphingosine 1-phosphate	ME934598	1.12	0.70	1.94	0.23	1.64	1.49	0.83	0.47	0.90	0.79
Hexadecenoic acid (Palmitoleic acid)	ME934609	0.74	0.61	1.88	0.48	2.13	1.64	0.82	0.53	0.92	0.65
(S)(+)-Allantoin	ME934550	1.12	0.75	1.10	0.32	2.17	1.51	0.69	0.56	1.12	0.75
Linoleic acid ((9Z,12Z)-Octadecadienoic acid)	ME934611	1.04	0.75	1.39	0.29	1.98	1.85	0.86	0.41	0.96	0.72
Octadecenoic acid (Oleic acid)	ME934610	1.02	0.68	1.53	0.34	2.09	1.74	0.76	0.50	1.04	0.63
Malate	ME934570	0.78	1.00	1.39	0.62	0.49	0.82	1.62	0.57	0.93	1.78
Glycerol 3-phosphate	ME934595	0.39	0.94	2.12	0.67	0.92	1.01	1.30	1.26	0.69	0.77
2-Oxoglutaramate	ME934567	0.66	0.92	1.76	0.46	1.04	1.16	1.32	0.97	0.92	0.87
3-Sulfino-L-alanine	ME934592	0.87	0.78	1.83	0.56	0.93	1.13	0.91	0.96	1.31	0.92
D-Ribose	ME934563	0.80	0.76	1.00	0.74	1.44	1.19	0.85	0.75	0.86	1.85
L-Arabinose	ME934584	0.80	0.76	1.00	0.74	1.44	1.19	0.85	0.75	0.86	1.85
2-Oxoglutarate 13C5	ME934622	0.88	0.95	0.84	0.85	0.92	0.95	1.69	0.73	0.97	1.26
Itaconate 13C3	ME934623	1.22	1.08	1.08	0.64	1.10	0.60	1.28	1.24	0.82	0.86
Itaconate 13C4	ME934624	1.03	0.95	1.06	0.58	1.06	0.71	1.31	1.25	0.97	1.14
Taurine	ME934591	1.45	1.15	1.26	0.58	1.00	1.08	0.93	0.90	0.80	0.69
3-Phosphonooxypyruvate	ME934580	1.11	1.07	1.24	0.51	1.19	1.03	1.00	0.87	1.03	0.88
alpha-D-Glucosamine 1-phosphate	ME934583	1.24	1.17	1.27	0.28	1.03	0.98	1.02	0.88	1.26	0.71
Itaconate 13C5	ME934625	0.86	0.78	0.82	0.89	0.97	1.08	1.11	1.05	1.21	1.44
Fructose bisphosphate 13C6	ME934633	0.83	1.02	1.15	0.97	0.90	1.29	1.10	0.50	1.05	1.17
Diphosphate	ME934555	0.81	0.96	1.00	0.65	1.42	1.05	1.02	0.78	1.35	1.00
Phosphate	ME934554	0.89	0.97	1.06	0.68	1.32	1.15	0.99	0.73	1.21	1.04
Hexanoic acid (caproate)	ME934600	0.90	0.97	0.94	0.93	0.98	1.05	1.21	1.13	0.92	1.00
L-Cysteate	ME934594	0.80	1.11	0.89	0.98	0.98	0.88	1.03	1.08	1.08	1.06
Dodecanoic acid (lauric acid)	ME934604	1.00	0.92	1.08	0.93	1.20	1.38	0.88	0.90	0.91	0.88
Tetradecanoic acid (myristic acid)	ME934605	1.00	0.95	1.20	0.88	1.17	1.05	1.02	0.86	0.96	0.96
Heptanoic acid	ME934601	1.04	0.97	1.07	1.09	1.03	1.06	1.00	0.89	0.90	0.98
Octanoic acid (caprylic acid)	ME934602	1.08	0.96	1.06	1.03	1.05	1.00	1.04	0.89	0.91	1.04
Octadecanoic acid (stearic acid)	ME934607	1.08	0.94	1.18	0.88	0.94	1.05	0.91	1.02	1.07	1.00
Thymine	ME934545	1.01	1.00	1.05	0.88	0.99	1.03	1.02	0.94	1.10	0.98
Hexadecanoic acid (palmitic acid)	ME934606	1.08	1.00	1.09	0.91	1.01	1.07	0.97	0.96	0.97	0.94
Nonanoic acid (pelargonic acid)	ME934603	0.98	0.96	1.07	0.96	1.08	1.12	0.98	0.95	0.96	0.99
Dehydroascorbate	ME934577	0.94	0.51	0.58	0.53	3.46	0.86	0.95	0.87	0.54	0.81
a-Linolenic acid (Octadecatrienoic acid)	ME934612	0.57	0.53	1.22	0.21	3.13	2.23	0.68	0.32	0.91	0.65
alpha-D-Ribose 1-phosphate	ME934575	0.61	0.82	1.15	0.08	2.53	2.73	0.48	0.26	1.03	0.48
beta-L-Arabinose 1-phosphate	ME934588	0.61	0.82	1.15	0.08	2.53	2.73	0.48	0.26	1.03	0.48
Arachidonic acid (Eicosatetraenoic acid)	ME934613	0.59	0.96	0.60	0.20	2.70	2.56	0.70	0.29	0.73	0.72
Dihomo-gamma-linolenic acid ((8Z-11Z-14Z)-Icosatrienoic acid)	ME934616	0.73	0.93	0.69	0.20	2.55	2.31	0.73	0.27	0.82	0.83
ADP-D-ribose	ME934553	1.22	0.67	0.69	0.32	2.14	2.17	0.31	0.68	1.30	0.68
Phosphoglycerate 13C3	ME934634	1.09	0.51	1.14	0.14	2.58	1.60	0.23	0.10	1.25	0.70
Succinate	ME934568	1.33	0.74	0.91	0.14	2.51	1.77	0.64	0.34	1.34	0.53

Factors:

F1	time (h):0 \| Dead E coli treatment:no \| inhibitor:none \| \| genotype:RagA GTP mutant
F2	time (h):0 \| Dead E coli treatment:no \| inhibitor:none \| \| genotype:WT
F3	time (h):18 \| Dead E coli treatment:yes \| inhibitor:150 nM concanamycin A \| \| genotype:WT
F4	time (h):18 \| Dead E coli treatment:yes \| inhibitor:50 nM bafilomycin A1 \| \| genotype:WT
F5	time (h):18 \| Dead E coli treatment:yes \| inhibitor:none \| \| genotype:RagA GTP mutant
F6	time (h):18 \| Dead E coli treatment:yes \| inhibitor:none \| \| genotype:WT
F7	time (h):6 \| Dead E coli treatment:yes \| inhibitor:150 nM concanamycin A \| \| genotype:WT
F8	time (h):6 \| Dead E coli treatment:yes \| inhibitor:50 nM bafilomycin A1 \| \| genotype:WT
F9	time (h):6 \| Dead E coli treatment:yes \| inhibitor:none \| \| genotype:RagA GTP mutant
F10	time (h):6 \| Dead E coli treatment:yes \| inhibitor:none \| \| genotype:WT

Data matrix