Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST003605)

(Analysis AN005923)

Metabolite	Structure	F1	F2	F3	F4	F5	F6
D-Fructose 1-6-bisphosphate	ME934778	0.65	0.41	0.40	3.12	0.91	0.50
Phosphocreatine	ME934804	1.42	2.28	1.81	0.17	0.19	0.13
Serotonin	ME934808	2.15	1.12	0.35	1.22	0.82	0.34
alpha-D-Ribose 1-phosphate 13C5	ME934844	0.74	1.73	0.06	0.85	2.56	0.07
Malate 13C4	ME934834	0.81	1.99	0.02	0.65	2.17	0.02
Adenine 13C5	ME934838	1.54	1.15	0.01	0.57	1.08	0.02
Adenosine 13C10	ME934837	1.28	1.17	NA	0.38	1.17	NA
ADP 13C10	ME934835	0.63	1.36	0.03	0.97	1.36	NA
amp 13c10	ME934836	0.50	1.64	NA	0.40	1.47	NA
2-Hydroxyglutarate/Citramalate	ME934792	0.49	0.49	0.78	1.14	0.83	2.27
2-Oxoglutarate	ME934786	0.34	0.36	1.11	1.04	0.60	2.54
Adenine	ME934760	1.08	0.77	2.33	0.53	0.66	0.63
Adenosine	ME934759	1.12	0.63	2.63	0.44	0.60	0.58
Hexose phosphate 13C6	ME934839	0.96	1.04	1.81	NA	0.52	0.79
Hypotaurine	ME934806	1.12	1.38	1.57	0.55	0.57	0.81
Taurine	ME934805	1.05	1.07	1.53	0.61	0.66	1.08
ADP-D-ribose	ME934773	0.36	1.07	1.54	0.68	0.97	1.38
Ascorbate	ME934796	0.45	0.76	1.19	0.79	1.27	1.54
Inosine	ME934768	0.62	0.62	1.45	0.49	1.18	1.63
Dehydroascorbate	ME934797	0.53	0.83	1.40	0.41	1.15	1.49
Xanthine	ME934770	0.37	0.82	1.40	0.51	1.31	1.58
AMP	ME934758	0.73	1.33	1.55	0.57	1.02	0.80
UDP-glucose	ME934772	0.49	1.34	1.51	0.66	1.08	0.92
Glutathione	ME934795	0.99	1.51	1.31	0.56	1.13	0.50
6-Aminohexanoate	ME934829	0.64	1.55	1.25	0.55	1.29	0.71
Mannitol	ME934784	0.65	1.65	1.45	0.52	1.10	0.63
Carnosine	ME934803	0.45	1.76	1.11	0.51	1.49	0.68
gamma-Glutamyl-gamma-aminobutyrate	ME934798	0.50	1.79	1.27	0.45	1.49	0.50
GMP	ME934762	0.60	1.37	1.30	0.36	1.64	0.74
UMP	ME934765	0.50	1.22	1.50	0.39	1.45	0.93
2/3-Phospho-D-glycerate	ME934780	0.75	1.31	0.63	0.95	1.71	0.66
Cytidine	ME934763	1.06	1.55	0.72	0.74	1.52	0.40
Fumarate	ME934788	0.87	1.46	0.68	0.75	1.56	0.67
Malate	ME934789	0.94	1.39	0.76	0.80	1.45	0.66
CMP-N-acetylneuraminate	ME934802	0.45	1.11	0.82	0.96	1.70	0.96
N-Acetylmethionine	ME934831	0.55	1.55	0.86	0.55	1.71	0.78
L-asparagine	ME934756	0.68	1.38	1.01	0.61	1.37	0.96
Urate	ME934771	0.52	1.27	0.93	0.63	1.48	1.17
Citrate	ME934785	1.26	1.33	1.10	1.10	0.77	0.43
Maltose	ME934783	0.91	1.19	1.11	1.16	0.42	1.21
(5Z-8Z-11Z-14Z-17Z)-Icosapentaenoic acid	ME934827	0.70	0.82	1.24	0.80	0.70	1.74
IMP	ME934767	1.08	0.77	1.22	0.96	0.59	1.38
Hexadecenoic acid	ME934820	1.34	1.00	0.78	1.07	1.07	0.74
Succinate	ME934787	1.36	1.13	0.75	0.60	1.29	0.88
Itaconate	ME934791	0.91	0.68	0.69	1.34	1.07	1.30
ADP	ME934757	0.77	0.93	1.05	1.18	0.89	1.18
Lactate	ME934782	0.97	0.74	0.97	1.40	0.82	1.10
dTMP	ME934764	0.91	1.04	0.64	1.23	1.27	0.94
GDP	ME934761	0.60	1.11	0.91	1.15	1.14	1.10
(8Z-11Z-14Z)-Icosatrienoic acid	ME934826	0.67	1.20	0.65	1.02	1.37	1.08
IDP	ME934766	0.75	1.06	0.82	0.98	1.34	1.05
Hypoxanthine	ME934769	0.75	0.84	1.06	0.80	1.09	1.47
Eicosatetraenoic acid	ME934823	0.83	0.94	0.82	0.93	1.16	1.32
Octadecenoic acid	ME934821	0.89	1.07	0.79	0.85	1.14	1.27
(7Z-10Z-13Z-16Z-19Z)-Docosa-7-10-13-16-19-pentaenoic acid	ME934828	0.72	0.97	1.04	0.96	1.08	1.23
alpha-D-Ribose 1-phosphate	ME934794	0.73	0.95	0.96	0.88	1.23	1.25
Docosahexaenoic acid	ME934824	0.86	1.21	1.25	0.96	1.00	0.72
Fructose bisphosphate 13C6	ME934840	0.86	1.09	1.14	1.05	0.98	0.89
D-Glucose	ME934776	0.68	1.12	1.14	0.87	1.32	0.89
UDP-N-acetyl-D-glucosamine	ME934801	0.78	1.26	1.10	0.85	1.14	0.87
Sedoheptulose 1-phosphate 13C7	ME934843	0.98	1.02	0.86	0.90	1.30	0.95
Nonanoic acid (pelargonate)	ME934813	0.84	1.18	0.87	1.00	1.09	1.02
Diphosphate	ME934775	0.90	1.20	0.98	0.96	1.14	0.83
Oxaloacetate	ME934790	0.88	1.10	0.95	1.03	1.15	0.89
Phosphate	ME934774	0.84	1.05	1.05	1.01	1.13	0.90
Glyceraldehyde 3-phosphate 13C3	ME934841	1.02	1.18	0.83	1.05	0.92	1.00
Dodecanoic acid	ME934815	0.97	0.97	0.93	0.94	0.98	1.19
Linoleate	ME934822	0.91	1.16	0.86	0.92	0.93	1.22
Tetradecenoic acid	ME934819	1.21	0.94	1.01	0.84	1.10	0.91
D-Glyceraldehyde 3-phosphate/Glycerone phosphate	ME934779	1.25	0.95	0.95	0.99	0.96	0.90
Dodecanedioic acid	ME934825	1.16	1.00	1.05	0.90	0.96	0.93
Octadecanoic acid	ME934818	0.80	0.86	1.18	0.97	1.15	1.04
Pyruvate	ME934781	0.92	0.92	1.13	0.94	1.05	1.05
Hexanoic acid (caproate)	ME934811	0.98	0.90	1.09	1.02	0.97	1.03
2-Oxoglutarate 13C54	ME934833	0.95	0.90	1.01	1.11	1.04	1.00
Heptanoic acid	ME934812	0.95	0.92	1.01	1.05	1.04	1.02
Hexadecanoic acid	ME934817	1.06	0.98	0.91	1.03	1.01	1.01
3-Methyl-2-oxobutanoic acid	ME934832	0.94	0.99	1.02	0.97	1.04	1.05
Decanoic acid (caprate)	ME934814	1.00	0.99	0.98	0.97	1.08	0.98
L-4-Hydroxyglutamate semialdehyde	ME934830	1.16	0.82	1.01	1.06	0.95	1.00
Tetradecanoic acid	ME934816	1.03	0.80	1.04	1.00	1.00	1.13
D-Glucose 6-phosphate	ME934777	0.66	0.57	0.69	1.92	0.82	1.33
Sedoheptulose 1-phosphate	ME934793	0.73	0.62	0.68	2.08	0.99	0.90
Phosphoenolpyruvate 13C3	ME934842	0.24	1.15	NA	1.31	1.04	0.88
N-Acetylneuraminate	ME934799	0.34	0.68	0.30	1.47	2.18	1.03
N-Glycoloyl-neuraminate	ME934800	0.31	0.73	0.38	1.20	1.93	1.45
sn-glycero-3-Phosphoethanolamine	ME934810	1.18	0.70	0.33	1.52	1.71	0.56
Glycerol 3-phosphate	ME934809	0.66	1.28	0.65	1.41	1.34	0.66
N-formyl kynurenine	ME934807	0.59	0.84	0.62	1.52	1.71	0.72

Factors:

F1	genotype:Cre RagA KO \| treatment:dead bacteria \| time (h):18
F2	genotype:Cre RagA KO \| treatment:dead bacteria \| time (h):6
F3	genotype:Cre RagA KO \| treatment:none \| time (h):18
F4	genotype:WT \| treatment:dead bacteria \| time (h):18
F5	genotype:WT \| treatment:dead bacteria \| time (h):6
F6	genotype:WT \| treatment:none \| time (h):18

Data matrix