Clustering data with hclust algorithm for (Study ST000692)

(Analysis AN001069)
MetaboliteStructureF1F2F3F4F5F6F7F8F9F10F11F12F13F14F15F16F17F18F19F20F21F22F23F24F25F26F27F28F29F30F31F32F33
4-HYDROXYBENZOATE (CAS# 99-96-7); (M-H)-ME1929731.251.560.830.581.111.33NANANANANA0.46NANA0.54NANANANANA0.841.510.840.820.851.01NANANA0.810.690.50NA
D-LYXOSE (CAS# 1114-34-7); (M-H)-ME193068NA1.100.100.060.050.05NA0.020.03NA0.05NA0.045.14NA4.52NANANANANA1.30NANANA1.240.030.050.056.66NANA0.06
3-METHYLADIPIC ACID (CAS# 3058-01-3); (M-H)-ME1929621.101.110.930.381.160.771.070.941.441.281.140.961.101.340.600.85NANANANA0.831.041.310.690.540.801.09NA1.520.631.190.881.01
DECANOATE (CAS# 334-48-5); (M-H)-ME1930740.690.801.44NANA1.030.94NANANA0.911.861.141.391.201.16NANANANA0.860.76NA1.680.970.740.510.56NA0.981.500.880.73
GLUCOSE (CAS# 50-99-7); (M+CL)-ME1931252.322.48NA2.390.251.250.190.210.26NA0.190.050.240.161.610.14NANANANA2.091.47NA1.981.501.920.180.24NA0.210.18NA0.16
GLUTARATE (CAS# 110-94-1); (M-H)-ME1931310.340.300.500.264.790.200.100.110.365.480.650.330.360.150.310.23NANANANANA0.460.53NA3.170.370.320.720.187.650.540.830.55
GLUCOSE 1-PHOSPHATE (CAS# 59-56-3); (M-H)-ME1931260.000.000.521.530.160.342.30NA1.960.011.65NA1.871.36NA1.11NANANANANANANANA0.00NA1.021.55NANA0.88NA1.00
DOCOSAHEXAENOIC ACID (CAS# 6217-54-5 ); (M-H)-ME1930930.510.460.38NA0.661.28NA1.415.642.131.841.161.390.26NA0.26NANANANANANANANANANANA0.170.250.300.310.270.32
DEOXYURIDINE (CAS# 951-78-0); (M-H)-ME1930861.670.741.140.30NA1.080.850.450.340.950.641.291.130.88NANANANANANA1.69NA1.851.21NA0.97NA0.680.24NA0.59NANA
DEOXYCHOLIC ACID (CAS# 83-44-3); (M-H)-ME1930811.570.991.270.49NA1.090.850.861.390.760.901.080.900.671.270.66NANANANA1.191.311.201.221.331.190.760.650.770.660.770.590.80
ACETOACETATE (CAS# 541-50-4); (M-H)-ME1929920.692.430.64NANA1.480.67NA0.90NA0.120.790.882.090.151.73NANANANANA0.73NANANA0.450.291.571.050.731.41NA1.37
5-AMINOPENTANOATE (CAS# 660-88-8); (M-H)-ME1929841.362.241.290.671.431.190.400.380.41NA0.66NA0.70NA0.390.57NANANANA0.982.181.051.500.561.170.350.100.660.690.90NA0.90
6-CARBOXYHEXANOATE (CAS# 111-16-0); (M-H)-ME1929891.071.090.780.371.140.751.050.921.401.251.110.931.071.310.580.83NANANANA0.811.011.280.670.530.781.07NA1.480.721.160.861.45
5-OXOPROLINE (CAS# 4042-36-8); (M-H)-ME1929881.421.530.681.320.071.310.880.870.93NA0.78NA1.020.750.910.75NANANANA1.081.160.781.18NA1.180.740.690.83NA0.92NA0.91
ALLOSE (CAS# 2595-97-3); (M-H)+[-H2O]ME1930051.500.910.760.791.761.220.951.111.050.171.281.041.271.101.401.00NANANANA0.820.890.770.601.300.811.120.900.900.780.48NA1.00
GAMMA-LINOLENIC ACID (CAS# 506-26-3); (M+HCOO)-ME1931130.540.570.960.681.900.760.700.701.981.452.441.300.981.041.150.97NANANANA1.170.900.990.960.750.670.770.690.720.881.010.750.75
ARACHIDONATE (CAS# 506-32-1); (M-H)-ME1930121.671.592.540.143.961.320.001.865.431.040.630.811.830.310.590.33NANANANA0.450.561.020.591.030.440.000.160.310.200.110.240.22
EPIBRASSINOLIDE [ISTD] (CAS# 78821-43-9); (M+CL)-ME1930980.970.931.300.131.940.981.030.881.021.071.091.171.081.071.100.88NANANANA1.031.031.221.121.170.830.820.880.800.920.930.850.96
ALPHA-LINOLENIC ACID (CAS# 463-40-1); (M+HCOO)-ME1930080.540.570.960.681.900.760.700.701.981.452.441.300.981.041.150.97NANANANA1.160.900.990.960.750.670.770.690.720.881.020.750.75
CIS-ACONITATE (CAS# 585-84-2); (M-H)-ME1930390.60NA0.450.40NA0.691.541.281.730.760.500.380.440.95NA0.63NANANANANA0.600.46NANA0.522.95NA4.360.930.96NA1.00
GAMMA-BUTYROLACTONE (CAS# 96-48-0); (M+HCOO)-ME1931110.290.25NA0.224.06NA0.08NA0.304.640.550.280.170.13NA0.20NANANANANA0.410.45NA2.680.310.270.610.156.480.29NA0.47
5^-DEOXYADENOSINE (CAS# 4754-39-6); (M+HCOO)-ME1929810.751.230.230.101.170.993.08NA0.81NA1.110.880.95NA0.07NANANANANA0.610.700.66NANA0.621.09NA1.121.391.661.351.41
BETA-MALTOSE (CAS# 69-79-4); (M+CL)-ME1930210.630.211.070.270.38NANANANANA2.22NA2.05NA2.121.34NANANANANA0.130.95NA0.380.64NA1.411.131.531.10NA1.07
CIS-VACCENIC ACID (CAS# 506-17-2); (M-H)-ME1930403.691.541.020.063.252.140.080.182.380.180.680.131.340.371.550.36NANANANA1.811.360.200.090.911.200.080.090.240.030.100.030.03
ASPARTATE (CAS# 56-84-8); (M-H)-ME1930141.601.392.307.970.401.230.240.620.50NA0.380.160.27NA0.64NANANANANA0.730.51NA1.150.27NANA0.240.25NANA0.120.19
ELAIDIC ACID (CAS# 112-79-8); (M-H)-ME1930973.691.541.020.063.252.140.080.182.380.180.680.131.340.371.550.36NANANANA1.811.360.200.090.911.200.080.090.240.030.100.030.03
GIBBERELLIC ACID [ISTD] (CAS# 77-06-5); (2M-H)-ME1931163.002.103.51NA3.211.480.210.160.210.190.170.220.21NANANANANANANANA1.22NANANANANANANA0.280.150.270.15
ADENOSINE (CAS# 58-61-7); (M+HCOO)-ME1929961.410.350.982.770.731.061.173.400.340.120.430.590.95NA4.74NANANANANA0.12NANA0.26NANA0.04NANANANA0.21NA
CITRAMALATE (CAS# 2306-22-1); (M-H)-ME1930430.562.050.201.090.301.210.17NA0.220.551.210.531.410.250.130.29NANANANA0.411.250.24NANA0.600.19NA0.210.233.090.043.50
4-METHYL-2-OXOVALERIC ACID (CAS# 816-66-0); (M-H)-ME1929760.76NA0.160.24NA0.470.882.192.88NA0.220.460.440.13NA0.11NANANANANANA0.560.77NA1.20NANA7.29NA0.37NANA
CIS-ZEATIN (CAS# 1637-39-4); (M-H)-ME1930420.670.600.780.670.680.673.463.073.471.352.641.401.670.900.230.93NANANANA0.250.310.250.240.290.280.760.960.860.780.680.660.87
ETHYLMALONIC ACID (CAS# 601-75-2); (M-H)-ME1931011.121.031.220.351.571.130.820.930.850.891.480.161.410.95NA0.45NANANANA1.090.411.40NA0.56NA1.310.131.071.351.75NANA
AZELAIC ACID (CAS# 123-99-9); (M-H)-ME1930152.131.641.520.691.801.410.620.670.810.740.810.600.730.830.550.45NANANANA0.971.951.370.891.111.080.520.430.560.410.540.590.67
CIS-ZEATIN (CAS# 1637-39-4); (M+CL)-ME1930410.370.270.461.050.410.383.263.023.231.682.851.882.290.930.091.13NANANANA0.11NA0.08NA0.110.120.730.980.840.560.480.450.70
GIBBERELLIC ACID [ISTD] (CAS# 77-06-5); (M-H)-ME1931181.141.281.270.251.121.211.361.221.351.281.281.291.271.250.351.07NANANANA0.440.680.420.450.480.471.141.221.131.221.071.191.14
EPIBRASSINOLIDE [ISTD] (CAS# 78821-43-9); (M+HCOO)-ME1930991.051.001.210.171.541.001.130.961.121.121.091.101.061.021.020.86NANANANA0.950.981.101.051.150.900.880.940.870.970.930.930.97
GUANINE (CAS# 73-40-5); (M-H)-ME1931401.781.89NA0.44NA1.330.990.700.77NA1.06NA0.81NA0.56NANANANANA0.851.630.370.63NA1.390.510.460.66NA0.40NA0.63
D-PSICOSE (CAS# 551-68-8); (M+CL)-ME1930712.472.46NA2.370.251.240.190.200.26NA0.190.050.240.151.590.14NANANANA2.071.46NA1.971.481.910.180.23NA0.210.17NA0.16
16:0 LYSO PC (CAS# 17364-16-8); (M+HCOO)-ME1929322.150.714.230.514.982.220.030.10NA2.743.062.082.810.060.300.11NANANANA0.050.050.040.100.010.080.110.020.030.030.060.020.06
GIBBERELLIC ACID [ISTD] (CAS# 77-06-5); (M+CL)-ME1931172.452.012.97NA2.900.840.530.440.490.420.450.500.470.650.320.45NANANANA0.852.21NANANANA0.440.540.480.510.510.510.47
4-NITROBENZOIC ACID (CAS# 62-23-7); (M-H)-ME1929771.091.381.590.281.551.610.730.600.860.110.530.851.322.05NA0.34NANANANA0.040.10NA0.04NA3.053.231.171.340.450.441.930.42
FRUCTOSE (CAS# 57-48-7); (M+CL)-ME1931052.322.48NA2.390.251.250.190.210.26NA0.190.050.240.161.600.14NANANANA2.091.48NA1.981.501.920.180.24NA0.210.18NA0.16
D-ORNITHINE (CAS# 348-66-3); (M-H)-ME1930700.380.431.950.492.770.430.390.390.780.32NA0.710.09NANANANANANANA1.130.613.92NA4.981.370.310.240.830.53NA0.640.11
D-TAGATOSE (CAS# 87-81-0); (M+CL)-ME1930722.322.48NA2.390.251.250.190.210.26NA0.190.050.240.161.610.14NANANANA2.091.48NA1.981.501.920.180.24NA0.210.18NA0.16
CITRATE (CAS# 77-92-9); (M-H)-ME1930441.111.090.830.39NA1.040.900.640.78NA0.83NA0.891.091.311.09NANANANA1.311.361.141.34NA1.441.111.050.960.041.030.021.05
4-METHYL-2-OXOPENTANOATE (CAS# 816-66-0); (M-H)-ME1929750.77NA0.170.24NA0.470.862.222.92NA0.220.470.450.13NA0.11NANANANANANA0.560.78NA1.22NANA7.41NA0.38NA0.70
D-GLUCOSE 6-PHOSPHATE (CAS# 56-73-5); (M-H)-ME1930650.000.000.500.390.150.332.19NA1.872.181.56NA1.771.30NA1.06NANANANANANANANA0.00NA0.981.47NANA0.83NA0.94
FUMARATE (CAS# 110-17-8); (M-H)-ME1931070.260.270.19NANA0.350.090.040.680.440.32NA0.251.84NA1.79NANANANA0.416.140.42NA4.680.640.11NA0.670.730.51NA0.64
CYCLOHEPTANECARBOXYLIC ACID (CAS# 1460-16-8); (M+HCOO)-ME1930532.131.641.550.691.801.410.620.670.810.740.810.600.720.830.540.44NANANANA0.971.951.370.891.111.080.520.430.560.410.540.590.67
EDTA (CAS# 60-00-4); (M-H)-ME1930960.96NANANANA0.311.43NANA1.26NA0.021.270.880.840.85NANANANA0.690.430.67NANA0.801.220.871.132.091.58NA1.63
ARACHIDIC ACID (CAS# 506-30-9); (M-H)-ME1930114.170.783.280.343.211.73NANANA0.810.710.493.250.160.290.13NANANANA0.260.300.460.38NA0.330.140.160.130.270.200.150.16
FRUCTOSE (CAS# 57-48-7); (M+HCOO)-ME1931060.871.241.020.340.920.87NANANANANANANANA0.790.16NANANANA1.292.071.361.262.051.49NA0.24NA0.250.19NA0.31
CELLOBIOSE (CAS# 528-50-7); (M+CL)-ME1930340.630.211.070.270.38NANANANANA2.22NA2.05NA2.121.34NANANANANA0.130.95NA0.380.64NA1.411.131.531.10NA1.07
CIS-11-EICOSENOIC ACID (CAS# 5561-99-9); (M-H)-ME1930383.110.640.550.024.422.350.06NA0.040.032.310.022.71NA0.03NANANANANA0.090.060.070.020.030.07NANANANA0.04NANA
DIACETYL (CAS# 431-03-8); (M+HCOO)-ME1930890.280.25NA0.213.92NA0.08NA0.294.490.530.270.160.12NA0.41NANANANANA0.390.43NA2.150.300.270.570.426.29NANA0.46
2-HYDROXY-3-METHYLBUTYRIC ACID (CAS# 4026-18-0); (M-H)-ME1929420.490.710.450.240.780.551.213.30NA0.94NANA0.600.930.50NANANANANA0.510.720.510.510.990.641.983.311.411.441.43NANA
GLYCOCHOLATE (CAS# 475-31-0); (M-H)-ME1931381.371.33NANANA1.37NA0.250.410.71NANA0.39NA1.260.41NANANANA1.130.591.501.141.611.16NANANA0.41NA0.58NA
3-HYDROXY-3-METHYLGLUTARATE (CAS# 503-49-1); (M-H)-ME1929561.370.941.060.811.810.870.981.141.060.161.310.101.301.101.431.02NANANANA0.850.891.15NA1.330.741.140.920.92NA0.49NA1.42
ALPHA-D-GALACTOSE 1-PHOSPHATE (CAS# 2255-14-3); (M-H)-ME1930060.00NA0.511.490.020.222.24NA1.910.011.58NA1.811.32NA1.08NANANANANANANANA0.00NA1.001.51NANA0.85NA0.98
GLUCARIC ACID (CAS# 87-73-0); (M-H)+[-H2O]ME1931191.081.080.730.87NA0.880.000.530.440.080.70NA0.891.431.281.33NANANANA1.281.271.101.30NA1.301.211.331.220.081.29NA1.27

Factors:

F1Fraction:Cells | Growth media:NOS with TPP | Growth phase:Early log phase | Sample type:Cells, Cultured | species:denticola
F2Fraction:Cells | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Cells, Cultured | species:denticola
F3Fraction:Cells | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Cells, Cultured | species:medium
F4Fraction:Cells | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Cells, Cultured | species:phagedenis
F5Fraction:Cells | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Cells, Cultured | species:vincentii
F6Fraction:Cells | Growth media:NOS with TPP | Growth phase:Mid log phase | Sample type:Cells, Cultured | species:denticola
F7Fraction:Cells | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Cells, Cultured | species:maltophilum
F8Fraction:Cells | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Cells, Cultured | species:parvum
F9Fraction:Cells | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Cells, Cultured | species:pectinovorum
F10Fraction:Cells | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Cells, Cultured | species:vincentii
F11Fraction:Cells | Growth media:OMIZ with TPP | Growth phase:Late log phase | Sample type:Cells, Cultured | species:denticola
F12Fraction:Cells | Growth media:OMIZ with TPP | Growth phase:Late log phase | Sample type:Cells, Cultured | species:medium
F13Fraction:Cells | Growth media:OMIZ with TPP | Growth phase:Mid log phase | Sample type:Cells, Cultured | species:denticola
F14Fraction:Control media | Growth media:NOS + TPP | Growth phase:control media | Sample type:Culture | species:none
F15Fraction:Control media | Growth media:OMIZ | Growth phase:control media | Sample type:Culture | species:none
F16Fraction:Control media | Growth media:OMIZ + TPP | Growth phase:control media | Sample type:Culture | species:none
F17Fraction:Culture | Growth media:- | Growth phase:- | Sample type:- | species:-
F18Fraction:Pooled cells | Growth media:Pooled cells | Growth phase:Pooled cells | Sample type:Pooled sample | species:Pooled cells
F19Fraction:Pooled culture | Growth media:Pooled culture | Growth phase:Pooled culture | Sample type:Pooled sample | species:Pooled culture
F20Fraction:Pooled culture media | Growth media:Pooled culture media | Growth phase:Pooled culture media | Sample type:Pooled sample | species:Pooled culture media
F21Fraction:Supernatant | Growth media:NOS with TPP | Growth phase:Early log phase | Sample type:Culture Media | species:denticola
F22Fraction:Supernatant | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Culture Media | species:denticola
F23Fraction:Supernatant | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Culture Media | species:medium
F24Fraction:Supernatant | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Culture Media | species:phagedenis
F25Fraction:Supernatant | Growth media:NOS with TPP | Growth phase:Late log phase | Sample type:Culture Media | species:vincentii
F26Fraction:Supernatant | Growth media:NOS with TPP | Growth phase:Mid log phase | Sample type:Culture Media | species:denticola
F27Fraction:Supernatant | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Culture Media | species:maltophilum
F28Fraction:Supernatant | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Culture Media | species:parvum
F29Fraction:Supernatant | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Culture Media | species:pectinovorum
F30Fraction:Supernatant | Growth media:OMIZ | Growth phase:Late log phase | Sample type:Culture Media | species:vincentii
F31Fraction:Supernatant | Growth media:OMIZ with TPP | Growth phase:Late log phase | Sample type:Culture Media | species:denticola
F32Fraction:Supernatant | Growth media:OMIZ with TPP | Growth phase:Late log phase | Sample type:Culture Media | species:medium
F33Fraction:Supernatant | Growth media:OMIZ with TPP | Growth phase:Mid log phase | Sample type:Culture Media | species:denticola
Data matrix
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