Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for Arabidopsis Nit1 knockout metabolomics (Study ST001062)

HILIC NEGATIVE ION MODE (Analysis AN001737)

Metabolite	Structure	F1	F2	F3	F4	F5	F6
Arbutin	ME258215	0.61	0.65	3.31	0.65	0.65	0.75
5-Hydroxy-3-indoleacetic acid	ME258201	0.08	0.05	3.69	0.07	0.05	3.59
Oxaloacetic acid	ME258314	0.01	0.01	3.82	0.01	0.01	3.80
2-Hydroxynicotinic acid	ME258185	0.19	0.13	3.03	0.17	0.10	3.75
Cinnamic acid	ME258223	0.18	0.11	2.93	0.13	0.13	3.91
N-Acetylleucine	ME258302	0.36	0.29	3.03	0.36	0.24	2.80
2-Ketoglutaric Acid	ME258189	0.24	0.30	3.14	0.25	0.12	3.19
Dihydroorotic acid	ME258241	0.33	0.16	2.93	0.16	0.29	3.39
Aconitic acid	ME258206	0.47	0.70	3.35	0.32	0.37	1.81
Linoleic acid	ME258283	0.50	0.45	3.35	0.39	0.33	1.91
3-Indoleacetonitrile	ME258194	0.18	0.12	4.34	0.19	0.11	2.41
Phenylpyruvic acid	ME258321	0.22	0.16	4.24	0.17	0.16	2.38
Citric acid	ME258226	0.27	0.25	3.82	0.20	0.20	2.53
Methyl-4-hydroxy-3-methoxybenzoate	ME258293	0.16	0.20	4.04	0.18	0.19	2.62
L-.gamma.-Glutamyl-L-glutamic Acid	ME258278	0.36	1.00	0.67	0.54	2.28	2.06
Lysine	ME258286	0.61	1.18	0.72	0.81	2.40	0.76
Histidine	ME258266	0.84	1.12	0.20	0.91	2.92	0.21
Ornithine	ME258312	0.64	1.10	0.16	0.88	3.47	0.15
3-Hydroxy-3-methylglutaric acid	ME258190	0.78	2.43	0.87	0.93	0.41	0.83
Glycolic acid	ME258260	0.91	2.99	0.59	0.58	0.68	0.66
Uridine-5-diphosphoacetylgalactosamine	ME258350	1.49	1.09	0.02	1.39	1.26	0.02
beta-Nicotinamide adenine dinucleotide	ME258221	1.43	1.27	0.04	1.27	1.36	0.04
alpha-Hydroxyhippuric acid	ME258212	1.29	1.42	0.00	1.32	1.45	0.00
Phosphoric acid	ME258323	1.32	1.29	0.00	1.40	1.38	0.00
(2E,4E)-Hexa-2,4-dienoic acid	ME258174	1.40	1.08	0.34	1.14	1.31	0.29
Aminosalicylic acid	ME258213	1.44	0.81	0.38	1.24	1.17	0.38
Glutathione (oxidized)	ME258257	1.45	1.40	0.17	1.10	1.08	0.34
N-Acetylaspartic acid	ME258299	1.41	1.36	0.17	1.21	1.19	0.15
Guanosine-5^-monophosphate	ME258264	1.32	1.32	0.16	1.09	1.25	0.51
UDP-xylose	ME258347	1.36	1.15	0.06	1.27	1.23	0.41
N-alpha-Acetyl-L-ornithine	ME258306	1.57	1.65	0.37	0.66	1.32	0.24
Glu-Gln	ME258254	0.92	1.92	0.20	1.06	1.71	0.20
D-Gluconic acid	ME258238	1.03	1.81	0.39	1.00	1.36	0.37
Lactobionic acid	ME258280	1.07	1.94	0.49	0.93	1.07	0.52
S-(1,2-DICARBOXYETHYL)GLUTATHIONE	ME258334	1.05	0.79	0.02	1.73	1.72	0.02
D-(+)-Galacturonic acid	ME258233	0.85	1.16	0.50	1.10	2.01	0.43
Willardiine	ME258352	0.64	1.31	0.48	1.13	2.21	0.42
Allantoin	ME258211	0.97	1.10	0.25	1.16	2.13	0.29
Ribitol	ME258331	0.82	1.34	0.26	1.07	2.34	0.26
N,N-Dimethylarginine	ME258297	0.93	1.55	0.24	1.09	1.95	0.21
Arginine	ME258216	0.93	1.39	0.15	1.19	2.09	0.16
L-N.gamma.-Monomethylarginine	ME258285	0.89	1.42	0.21	1.12	2.18	0.18
Mucic acid	ME258296	1.33	0.85	0.08	1.22	2.00	0.08
Cystine	ME258231	1.13	1.24	0.18	1.18	1.73	0.28
Phosphoenolpyruvic acid	ME258322	1.28	1.12	0.06	1.13	1.81	0.26
Parabanic acid	ME258317	1.63	0.55	1.04	1.27	0.37	0.40
3-Phosphoglyceric acid	ME258196	2.00	0.38	0.13	1.34	0.86	0.16
D-Mannose 6-phosphate	ME258243	1.58	0.51	0.01	1.72	1.05	0.04
Uridine diphosphate galactose	ME258349	1.73	0.72	0.01	1.43	1.15	0.01
Citraconic acid	ME258224	1.71	0.54	0.46	1.39	0.43	0.55
Taurine	ME258345	1.60	0.42	0.15	1.63	0.40	0.77
Quercetin-3-O-beta-glucopyranosyl-7-O-alpha-rhamnopyranoside	ME258328	1.82	0.79	0.21	1.62	0.24	0.11
2^-Deoxycytidine	ME258181	1.78	0.27	0.15	2.01	0.16	0.13
Guanine	ME258261	1.75	0.18	0.24	1.88	0.32	0.26
2-Deoxyribose	ME258182	1.90	0.97	0.05	0.94	0.51	0.94
5-Aminosalicylic acid	ME258200	1.46	1.37	0.45	1.30	0.18	0.61
3-Hydroxyanthranilic acid	ME258191	1.43	1.48	0.32	1.16	0.78	0.34
2-Hydroxyphenylacetic acid	ME258186	1.48	1.77	0.18	1.37	0.30	0.17
Geniposide	ME258250	1.54	1.85	0.08	1.20	0.58	0.11
Glutathione (reduced)	ME258258	0.44	0.12	2.19	0.59	0.55	2.93
Phenylphosphoric acid	ME258320	0.69	0.54	1.60	0.62	0.52	2.61
Pyruvic acid	ME258327	0.71	0.74	1.60	0.62	0.59	2.32
Lipoic acid	ME258284	0.91	0.34	1.23	0.68	0.48	2.70
Ribose-5-phosphate	ME258332	0.92	0.45	1.04	0.87	0.60	2.29
Maleic acid	ME258287	0.54	0.39	2.81	0.63	0.34	1.99
6-Methylmercaptopurine	ME258204	0.36	0.50	2.71	0.54	0.54	2.27
Coniferylaldehyde	ME258228	0.61	0.35	2.56	0.53	0.39	2.26
.gamma.-Glu-Cys	ME258177	0.53	0.16	2.61	0.58	0.45	2.40
1,4-Butynediol	ME258178	0.87	0.47	2.56	0.61	0.59	1.33
Palmitic acid	ME258315	0.77	0.67	2.41	0.66	0.55	1.41
Orotic acid	ME258313	0.84	0.68	2.11	0.75	0.44	1.53
Robinin	ME258333	0.87	0.51	2.32	0.71	0.31	1.62
3-Phosphonopropionic acid	ME258197	0.68	0.28	2.12	0.69	0.78	1.98
5-Hydroxymethyluridine	ME258202	0.64	0.26	1.89	0.88	0.57	2.15
Glucoraphanin	ME258251	0.75	0.79	2.00	0.52	0.55	2.01
Methylacetate	ME258294	0.72	0.87	1.87	0.70	0.33	1.98
Succinic acid	ME258343	0.68	0.84	2.02	0.62	0.34	2.08
Shikimic acid	ME258338	0.68	0.60	1.87	0.91	0.53	1.77
Inositol	ME258272	0.90	0.50	1.80	0.68	0.45	2.01
Sinapoyl malate	ME258340	0.82	0.62	1.90	0.67	0.51	1.90
3-Methyladipic acid	ME258195	0.69	0.53	2.02	0.64	0.31	2.35
Dihydrocoumarin	ME258240	0.79	0.56	2.20	0.63	0.51	1.80
Fumaric acid	ME258246	0.75	0.38	2.05	0.74	0.44	2.05
Homovanillic acid	ME258269	0.78	0.43	2.14	0.77	0.40	1.87
Salicylic acid	ME258335	0.78	0.62	2.35	0.56	0.28	1.97
(2-oxo-2,3-dihydro-1H-indol-3-yl)acetic acid	ME258175	0.59	0.47	2.43	0.65	0.44	2.05
Dehydroascorbic acid	ME258237	0.75	0.44	2.26	0.58	0.39	2.15
2-Hydroxy-4-methylpentanoic acid	ME258183	0.77	1.74	1.05	0.79	0.87	1.15
Galactinol	ME258247	0.82	1.88	0.81	0.62	1.29	1.05
Melezitose	ME258291	0.74	1.30	1.43	0.84	1.36	0.70
Phenylacetylglutamine	ME258318	0.87	1.07	0.58	1.03	1.74	0.78
N,N-Dimethylglycine	ME258298	0.81	1.07	0.86	1.10	1.45	0.79
D-(-)-Mannitol	ME258232	0.85	1.01	0.98	0.85	1.59	0.97
Homoarginine	ME258267	0.80	1.32	0.94	0.82	1.55	0.89
Cyclic adenosine diphosphate ribose	ME258229	1.21	1.25	0.06	0.93	1.31	1.12
D-(+)-Glyceric acid	ME258234	1.30	1.17	0.38	1.49	0.53	0.46
N-Acetylneuraminic acid	ME258304	1.35	1.12	0.47	1.33	0.58	0.58
Glyceraldehyde	ME258259	1.18	0.92	0.41	1.67	0.68	0.44
Sorbose	ME258342	1.26	1.13	0.33	1.53	0.75	0.33
Propionic acid	ME258324	1.52	0.67	0.50	1.28	0.84	0.52
.beta.-D-Glucopyranose, 1,6-anhydro-	ME258176	1.20	0.72	0.79	1.46	0.65	0.63
Adenine	ME258207	1.35	0.85	0.54	1.38	0.76	0.51
Tagatose	ME258344	1.23	0.85	0.51	1.51	0.73	0.56
Hypoxanthine	ME258270	1.39	0.67	0.69	1.10	0.74	1.01
rac-Glycerol 3-phosphoate	ME258329	1.27	0.67	0.70	1.25	0.88	0.80
Isocitric acid	ME258273	1.36	0.68	0.87	0.77	0.96	1.26
Methyl-beta-galactopyranoside	ME258295	1.09	0.54	0.98	1.17	1.01	0.98
Sinapic acid	ME258339	1.12	0.74	0.98	0.89	1.23	1.04
Raffinose	ME258330	1.05	1.39	0.61	0.83	1.19	1.04
O-Phosphocolamine	ME258311	1.10	1.35	0.57	1.07	1.03	0.73
5-Hydroxytryptophan	ME258203	1.00	1.31	0.77	1.10	1.09	0.64
Pseudouridine	ME258325	0.93	1.23	0.66	1.16	1.28	0.65
Allantoic acid	ME258210	1.08	0.99	0.54	1.23	1.17	0.72
N-Acetylglycine	ME258301	1.18	1.05	0.63	1.31	0.93	0.49
Sarcosine	ME258336	1.05	1.18	0.58	1.28	1.07	0.54
Glucuronic acid	ME258253	1.05	1.06	0.82	1.09	0.72	1.13
beta-Hydroxyisovaleric acid	ME258220	1.01	0.96	0.80	1.14	0.97	1.00
Galactonic acid	ME258248	1.09	1.10	0.84	1.04	1.01	0.80
Pantothenic acid	ME258316	1.07	1.15	0.84	1.00	0.99	0.90
Citramalic acid	ME258225	1.03	1.37	0.90	1.02	0.87	0.77
Malonic acid	ME258289	1.22	1.17	0.77	1.05	0.74	0.83
Laricitrin	ME258282	1.35	0.44	2.06	0.69	0.67	0.76
Malic acid	ME258288	1.09	0.48	1.27	1.13	0.60	1.26
Catechol	ME258222	1.12	0.69	1.31	1.09	0.40	1.21
Uridine	ME258348	1.05	0.53	1.45	1.12	0.43	1.26
Dihydroxyacetone phosphate	ME258242	0.84	0.48	1.55	1.19	0.51	1.41
Kaempferol-3-O-beta-glucopyranosyl-7-O-alpha-rhamnopyranoside	ME258276	1.06	0.38	1.56	1.20	0.27	1.33
Guanosine-3^,5^-cyclic monophosphate	ME258263	1.42	0.46	0.85	1.32	0.43	0.91
Serine	ME258337	1.24	0.33	1.09	1.27	0.50	1.16
Glucose-6-phosphate	ME258252	0.97	0.58	0.85	0.97	0.78	1.91
2,4-Dibromophenol	ME258180	0.85	0.72	1.24	0.83	0.80	1.83
Arabitol	ME258214	0.80	0.89	1.02	0.86	0.99	1.72
D-(+)-Trehalose	ME258236	0.81	0.63	2.02	0.57	0.82	1.68
Ferulic acid	ME258244	0.77	1.08	1.51	0.55	1.11	1.54
Alanine	ME258208	0.77	1.11	1.56	0.59	0.88	1.64
Homoserine	ME258268	0.69	1.02	1.61	0.74	0.75	1.67
Xylitol	ME258353	0.87	0.48	1.56	0.85	0.83	1.64
Ascorbic acid	ME258217	0.91	0.67	1.49	0.88	0.78	1.44
Galactose	ME258249	0.91	0.76	1.58	0.84	0.68	1.44
Citrulline	ME258227	0.86	0.63	1.51	0.89	0.95	1.37
Guanosine	ME258262	0.82	0.69	1.50	0.81	0.98	1.52
Maltotriose	ME258290	0.72	0.92	1.89	0.78	0.51	1.60
1,4-Cyclohexanedicarboxylic acid	ME258179	0.77	0.96	1.62	0.88	0.60	1.45
N-Acetylmannosamine	ME258303	0.75	0.93	1.55	0.91	0.64	1.51
Kynurenic acid	ME258277	0.79	0.59	1.81	0.76	0.70	1.72
beta-Cyano-alanine	ME258219	0.81	0.75	1.64	0.82	0.58	1.69
N-Methylalanine	ME258309	0.86	0.75	1.64	0.77	0.70	1.60
Glutamic acid	ME258255	0.84	0.73	1.66	0.78	0.71	1.61
Pyroglutamic acid	ME258326	0.84	0.74	1.65	0.77	0.71	1.62
Inosine	ME258271	0.89	1.15	0.80	0.90	0.94	1.48
Lactitol	ME258279	0.75	1.31	1.06	0.91	1.18	1.07
Tryptophan	ME258346	0.78	1.22	1.01	0.91	1.25	1.08
Glutamine	ME258256	0.88	1.05	1.15	0.89	1.13	1.09
Isoleucine	ME258274	0.88	1.09	1.02	0.97	1.04	1.13
N-Methylserine	ME258310	0.96	1.00	1.07	0.93	0.94	1.19
N-Acetylglutamic acid	ME258300	0.69	0.98	1.47	0.87	1.05	1.31
Phenylalanine	ME258319	0.71	1.08	1.26	0.76	1.28	1.35
Ala-Val	ME258209	1.31	0.59	1.34	0.84	0.67	1.12
3-Hydroxybutyric acid	ME258192	1.31	0.72	1.13	0.88	0.62	1.17
Gulonolactone	ME258265	1.20	0.74	1.13	0.96	0.60	1.24
Fructose-1-phosphate	ME258245	0.99	0.50	1.20	1.03	0.77	1.50
2-Hydroxybenzaldehyde	ME258184	0.89	1.03	1.38	1.02	0.72	1.05
2-Ketogluconic acid	ME258188	1.12	0.87	1.25	1.05	0.57	1.01
Acetylenedicarboxylic acid	ME258205	0.97	0.82	1.34	1.08	0.65	1.09
3-Hydroxyglutaric acid	ME258193	0.98	0.89	1.31	0.92	0.64	1.35
Dihydro-4,4-dimethyl-2,3-furandione	ME258239	1.05	0.79	1.28	0.92	0.61	1.37
Benzene-1,2,4-triol	ME258218	0.99	0.85	1.02	0.99	0.83	1.35
4-Methylthiobutyl glucosinolate	ME258198	0.89	0.79	1.22	1.02	0.75	1.40
N-Formyl-L-methionine	ME258308	0.84	0.91	1.20	1.09	0.78	1.24
4-Pyridoxic acid	ME258199	0.86	0.80	1.25	1.04	0.86	1.27
Lactose B	ME258281	0.90	0.84	1.27	1.03	0.84	1.17
Isomaltose B	ME258275	0.91	0.76	1.26	0.86	1.10	1.30
Methioninesulfoxide	ME258292	0.87	0.86	1.38	0.86	0.88	1.38
Cysteic Acid	ME258230	0.95	0.82	1.31	0.89	0.89	1.28
N-epsilon-Acetyllysine	ME258307	0.87	0.91	1.27	0.89	0.94	1.32
Sorbitol	ME258341	0.71	0.88	1.74	0.85	0.98	1.19
N-Acetylserine	ME258305	0.90	0.93	1.56	0.83	0.85	1.16
Vaccenic acid	ME258351	0.90	0.93	1.73	0.76	0.82	1.14
2-Keto-3-deoxyoctonic acid	ME258187	1.07	1.08	1.44	0.67	0.76	1.20
D-(+)-Malic acid	ME258235	0.95	1.20	1.29	0.79	0.63	1.35

Factors:

F1	Genotype:Columbai-O_WT \| Treatment:1/2MS-media_3weeks \| Tissue Type:Whole Plant
F2	Genotype:Columbai-O_WT \| Treatment:1/2MS-media_4weeks \| Tissue Type:Whole Plant
F3	Genotype:Columbai-O_WT \| Treatment:SoilGrown_4weeks \| Tissue Type:Leaves
F4	Genotype:SALK_108849C_KO \| Treatment:1/2MS-media_3weeks \| Tissue Type:Whole Plant
F5	Genotype:SALK_108849C_KO \| Treatment:1/2MS-media_4weeks \| Tissue Type:Whole Plant
F6	Genotype:SALK_108849C_KO \| Treatment:SoilGrown_4weeks \| Tissue Type:Leaves

Data matrix