Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST001478)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 04 \| Replicates:a
F2	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 04 \| Replicates:b
F3	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 04 \| Replicates:c
F4	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 05 \| Replicates:a
F5	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 05 \| Replicates:b
F6	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 05 \| Replicates:c
F7	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:a
F8	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:b
F9	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:c
F10	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 07 \| Replicates:a
F11	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 07 \| Replicates:b
F12	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Leaves \| Germination:day 07 \| Replicates:c
F13	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 04 \| Replicates:a
F14	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 04 \| Replicates:b
F15	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 04 \| Replicates:c
F16	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 05 \| Replicates:a
F17	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 05 \| Replicates:c
F18	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 05 \| Replicates:d
F19	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:a
F20	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:b
F21	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:c
F22	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 07 \| Replicates:a
F23	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 07 \| Replicates:b
F24	Sample Type:Control \| Concentration:0.0 ug \| Sample Source:Roots \| Germination:day 07 \| Replicates:c
F25	Sample Type:ES7 Treated \| Concentration:10.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:a
F26	Sample Type:ES7 Treated \| Concentration:10.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:b
F27	Sample Type:ES7 Treated \| Concentration:10.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:c
F28	Sample Type:ES7 Treated \| Concentration:10.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:a
F29	Sample Type:ES7 Treated \| Concentration:10.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:b
F30	Sample Type:ES7 Treated \| Concentration:10.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:c
F31	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:a
F32	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:b
F33	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:c
F34	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:a
F35	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:b
F36	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:c
F37	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:a
F38	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:b
F39	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:c
F40	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:a
F41	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:b
F42	Sample Type:ES7 Treated \| Concentration:3.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:c
F43	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:a
F44	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Leaves \| Germination:day 06 \| Replicates:b
F45	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:a
F46	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:b
F47	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Leaves \| Germination:day 10 \| Replicates:c
F48	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:a
F49	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:b
F50	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:c
F51	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 06 \| Replicates:r
F52	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:a
F53	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:b
F54	Sample Type:ES7 Treated \| Concentration:5.0 ug \| Sample Source:Roots \| Germination:day 10 \| Replicates:c

Data matrix