Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST001683)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Experiment:community \| Sample_type:caecal \| Colonization:Bt_Ca_Er_Pd_Et
F2	Experiment:community \| Sample_type:caecal \| Colonization:Cs_Bt_Ca_Er_Pd_Et
F3	Experiment:community \| Sample_type:caecal \| Colonization:germ-free
F4	Experiment:community \| Sample_type:feces \| Colonization:Bt_Ca_Er_Pd_Et
F5	Experiment:community \| Sample_type:feces \| Colonization:Cs_Bt_Ca_Er_Pd_Et
F6	Experiment:community \| Sample_type:feces \| Colonization:germ-free
F7	Experiment:community \| Sample_type:serum \| Colonization:Bt_Ca_Er_Pd_Et
F8	Experiment:community \| Sample_type:serum \| Colonization:Cs_Bt_Ca_Er_Pd_Et
F9	Experiment:community \| Sample_type:serum \| Colonization:germ-free
F10	Experiment:community \| Sample_type:urine \| Colonization:Bt_Ca_Er_Pd_Et
F11	Experiment:community \| Sample_type:urine \| Colonization:Cs_Bt_Ca_Er_Pd_Et
F12	Experiment:community \| Sample_type:urine \| Colonization:germ-free
F13	Experiment:conventional \| Sample_type:caecal \| Colonization:conventional
F14	Experiment:conventional \| Sample_type:caecal \| Colonization:germ-free
F15	Experiment:conventional \| Sample_type:feces \| Colonization:conventional
F16	Experiment:conventional \| Sample_type:feces \| Colonization:germ-free
F17	Experiment:conventional \| Sample_type:serum \| Colonization:conventional
F18	Experiment:conventional \| Sample_type:serum \| Colonization:germ-free
F19	Experiment:conventional \| Sample_type:urine \| Colonization:conventional
F20	Experiment:conventional \| Sample_type:urine \| Colonization:germ-free
F21	Experiment:mono-colonization_2 \| Sample_type:caecal \| Colonization:As
F22	Experiment:mono-colonization_2 \| Sample_type:caecal \| Colonization:Cp
F23	Experiment:mono-colonization_2 \| Sample_type:caecal \| Colonization:germ-free
F24	Experiment:mono-colonization_2 \| Sample_type:feces \| Colonization:As
F25	Experiment:mono-colonization_2 \| Sample_type:feces \| Colonization:Cp
F26	Experiment:mono-colonization_2 \| Sample_type:feces \| Colonization:germ-free
F27	Experiment:mono-colonization_2 \| Sample_type:serum \| Colonization:As
F28	Experiment:mono-colonization_2 \| Sample_type:serum \| Colonization:Cp
F29	Experiment:mono-colonization_2 \| Sample_type:serum \| Colonization:germ-free
F30	Experiment:mono-colonization_2 \| Sample_type:urine \| Colonization:As
F31	Experiment:mono-colonization_2 \| Sample_type:urine \| Colonization:Cp
F32	Experiment:mono-colonization_2 \| Sample_type:urine \| Colonization:germ-free
F33	Experiment:mono-colonization \| Sample_type:caecal \| Colonization:Bt
F34	Experiment:mono-colonization \| Sample_type:caecal \| Colonization:Cs
F35	Experiment:mono-colonization \| Sample_type:caecal \| Colonization:germ-free
F36	Experiment:mono-colonization \| Sample_type:feces \| Colonization:Bt
F37	Experiment:mono-colonization \| Sample_type:feces \| Colonization:Cs
F38	Experiment:mono-colonization \| Sample_type:feces \| Colonization:germ-free
F39	Experiment:mono-colonization \| Sample_type:serum \| Colonization:Bt
F40	Experiment:mono-colonization \| Sample_type:serum \| Colonization:Cs
F41	Experiment:mono-colonization \| Sample_type:serum \| Colonization:germ-free
F42	Experiment:mono-colonization \| Sample_type:urine \| Colonization:Bt
F43	Experiment:mono-colonization \| Sample_type:urine \| Colonization:Cs
F44	Experiment:mono-colonization \| Sample_type:urine \| Colonization:germ-free

Data matrix