Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST002088)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Columbia
F2	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Johns Hopkins
F3	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Other
F4	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:UCLA
F5	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:UCSF
F6	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Wake Forest University
F7	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Columbia
F8	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Johns Hopkins
F9	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Other
F10	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:UCLA
F11	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:UCSF
F12	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:U of Michigan
F13	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Wake Forest University
F14	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Never Smoked \| SITE_cat:Columbia
F15	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Never Smoked \| SITE_cat:Johns Hopkins
F16	GENDER:Female \| RACE.ETH:Black/Africian American \| smokStatus:Never Smoked \| SITE_cat:U of Michigan
F17	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Columbia
F18	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Johns Hopkins
F19	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Other
F20	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:UCLA
F21	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:UCSF
F22	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:U of Michigan
F23	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:U of Utah
F24	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Wake Forest University
F25	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Columbia
F26	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Johns Hopkins
F27	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Other
F28	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:UCLA
F29	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:UCSF
F30	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:U of Michigan
F31	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:U of Utah
F32	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Wake Forest University
F33	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:NA \| SITE_cat:Columbia
F34	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:NA \| SITE_cat:U of Utah
F35	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:Johns Hopkins
F36	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:Other
F37	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:UCLA
F38	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:UCSF
F39	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:U of Michigan
F40	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:U of Utah
F41	GENDER:Female \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:Wake Forest University
F42	GENDER:Female \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:Johns Hopkins
F43	GENDER:Female \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:Other
F44	GENDER:Female \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:UCLA
F45	GENDER:Female \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:U of Michigan
F46	GENDER:Female \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:U of Utah
F47	GENDER:Female \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:Columbia
F48	GENDER:Female \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:Other
F49	GENDER:Female \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:UCSF
F50	GENDER:Female \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:U of Michigan
F51	GENDER:Female \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:U of Utah
F52	GENDER:Female \| RACE.ETH:Other \| smokStatus:NA \| SITE_cat:Columbia
F53	GENDER:Female \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:Columbia
F54	GENDER:Female \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:Other
F55	GENDER:Female \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:UCSF
F56	GENDER:Female \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:U of Michigan
F57	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Columbia
F58	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Johns Hopkins
F59	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Other
F60	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:UCLA
F61	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:UCSF
F62	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:U of Michigan
F63	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Current Smoker \| SITE_cat:Wake Forest University
F64	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Columbia
F65	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Johns Hopkins
F66	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Other
F67	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:UCLA
F68	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:UCSF
F69	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Former Smoker \| SITE_cat:Wake Forest University
F70	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:NA \| SITE_cat:Johns Hopkins
F71	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Never Smoked \| SITE_cat:Johns Hopkins
F72	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Never Smoked \| SITE_cat:UCSF
F73	GENDER:Male \| RACE.ETH:Black/Africian American \| smokStatus:Never Smoked \| SITE_cat:U of Michigan
F74	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Columbia
F75	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Johns Hopkins
F76	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Other
F77	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:UCLA
F78	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:UCSF
F79	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:U of Michigan
F80	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:U of Utah
F81	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Current Smoker \| SITE_cat:Wake Forest University
F82	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Columbia
F83	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Johns Hopkins
F84	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Other
F85	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:UCLA
F86	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:UCSF
F87	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:U of Michigan
F88	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:U of Utah
F89	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Former Smoker \| SITE_cat:Wake Forest University
F90	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:NA \| SITE_cat:U of Utah
F91	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:NA \| SITE_cat:Wake Forest University
F92	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:Other
F93	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:UCSF
F94	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:U of Michigan
F95	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:U of Utah
F96	GENDER:Male \| RACE.ETH:Non-Hispanic, White \| smokStatus:Never Smoked \| SITE_cat:Wake Forest University
F97	GENDER:Male \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:Columbia
F98	GENDER:Male \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:Other
F99	GENDER:Male \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:UCLA
F100	GENDER:Male \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:UCSF
F101	GENDER:Male \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:U of Michigan
F102	GENDER:Male \| RACE.ETH:Other \| smokStatus:Current Smoker \| SITE_cat:U of Utah
F103	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:Columbia
F104	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:Other
F105	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:UCLA
F106	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:UCSF
F107	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:U of Michigan
F108	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:U of Utah
F109	GENDER:Male \| RACE.ETH:Other \| smokStatus:Former Smoker \| SITE_cat:Wake Forest University
F110	GENDER:Male \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:Columbia
F111	GENDER:Male \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:Johns Hopkins
F112	GENDER:Male \| RACE.ETH:Other \| smokStatus:Never Smoked \| SITE_cat:U of Utah

Data matrix