Clustering data with heatmap algorithm for (Study ST002161)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Genotype:Blank | Diet:Blank | Diet Duration:Blank | Treatment:Blank | Tissue:Blank | Collection Time (minute):Blank | Drinking:Blank
F2Genotype:KHK-c-KO | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):10 | Drinking:Water
F3Genotype:KHK-c-KO | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):120 | Drinking:Water
F4Genotype:KHK-c-KO | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):30 | Drinking:Water
F5Genotype:KHK-c-KO | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):60 | Drinking:Water
F6Genotype:KHK-c-KO | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):- | Drinking:Water
F7Genotype:Wild-type | Diet:CD | Diet Duration:12 weeks | Treatment:Fructose injection | Tissue:Systemic Serum | Collection Time (minute):1440 | Drinking:Water
F8Genotype:Wild-type | Diet:CD | Diet Duration:12 weeks | Treatment:Glycerate injection | Tissue:Systemic Serum | Collection Time (minute):1440 | Drinking:Water
F9Genotype:Wild-type | Diet:CD | Diet Duration:12 weeks | Treatment:Saline injection | Tissue:Systemic Serum | Collection Time (minute):1440 | Drinking:Water
F10Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Jejunum | Collection Time (minute):10 | Drinking:Water
F11Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Pancreas | Collection Time (minute):45 | Drinking:Water
F12Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Pancreas | Collection Time (minute):60 | Drinking:Water
F13Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Pancreas | Collection Time (minute):- | Drinking:Water
F14Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):10 | Drinking:Water
F15Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):120 | Drinking:Water
F16Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):15 | Drinking:Water
F17Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):30 | Drinking:Water
F18Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):45 | Drinking:Water
F19Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):60 | Drinking:Water
F20Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):90 | Drinking:Water
F21Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):- | Drinking:Water
F22Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):10 | Drinking:Water
F23Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):120 | Drinking:Water
F24Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):15 | Drinking:Water
F25Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):30 | Drinking:Water
F26Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):45 | Drinking:Water
F27Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):60 | Drinking:Water
F28Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):90 | Drinking:Water
F29Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):- | Drinking:Water
F30Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):120 | Drinking:Water
F31Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):15 | Drinking:Water
F32Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):30 | Drinking:Water
F33Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):45 | Drinking:Water
F34Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):60 | Drinking:Water
F35Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):90 | Drinking:Water
F36Genotype:Wild-type | Diet:CD | Diet Duration:3 days | Treatment:Glycerate injection | Tissue:Tail Vein Serum | Collection Time (minute):- | Drinking:Water
F37Genotype:Wild-type | Diet:CD | Diet Duration:4 weeks | Treatment:Control | Tissue:Jejunum | Collection Time (minute):10 | Drinking:Water
F38Genotype:Wild-type | Diet:CD | Diet Duration:4 weeks | Treatment:Control | Tissue:Liver | Collection Time (minute):10 | Drinking:Water
F39Genotype:Wild-type | Diet:CD | Diet Duration:4 weeks | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):10 | Drinking:Water
F40Genotype:Wild-type | Diet:CD | Diet Duration:4 weeks | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):10 | Drinking:Water
F41Genotype:Wild-type | Diet:CD | Diet Duration:4 weeks | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):- | Drinking:Fructose water
F42Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Jejunum | Collection Time (minute):10 | Drinking:Water
F43Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Pancreas | Collection Time (minute):45 | Drinking:Water
F44Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Pancreas | Collection Time (minute):60 | Drinking:Water
F45Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Pancreas | Collection Time (minute):- | Drinking:Water
F46Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):10 | Drinking:Water
F47Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):120 | Drinking:Water
F48Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):15 | Drinking:Water
F49Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):30 | Drinking:Water
F50Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):45 | Drinking:Water
F51Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):60 | Drinking:Water
F52Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):90 | Drinking:Water
F53Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):- | Drinking:Water
F54Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):10 | Drinking:Water
F55Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):120 | Drinking:Water
F56Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):15 | Drinking:Water
F57Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):30 | Drinking:Water
F58Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):45 | Drinking:Water
F59Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):60 | Drinking:Water
F60Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):90 | Drinking:Water
F61Genotype:Wild-type | Diet:HFD | Diet Duration:3 days | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):- | Drinking:Water
F62Genotype:Wild-type | Diet:HFD | Diet Duration:4 weeks | Treatment:Control | Tissue:Jejunum | Collection Time (minute):10 | Drinking:Water
F63Genotype:Wild-type | Diet:HFD | Diet Duration:4 weeks | Treatment:Control | Tissue:Liver | Collection Time (minute):10 | Drinking:Water
F64Genotype:Wild-type | Diet:HFD | Diet Duration:4 weeks | Treatment:Control | Tissue:Portal Vein Serum | Collection Time (minute):10 | Drinking:Water
F65Genotype:Wild-type | Diet:HFD | Diet Duration:4 weeks | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):10 | Drinking:Water
F66Genotype:Wild-type | Diet:HFD | Diet Duration:4 weeks | Treatment:Control | Tissue:Systemic Serum | Collection Time (minute):- | Drinking:Fructose water
Data matrix
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