Clustering data with heatmap algorithm for (Study ST002284)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Genotype:"NA, blank medium control" | Age:"NA, same batch medium as 1-month-old" | Extracted Sample:Culture medium
F2Genotype:"NA, blank medium control" | Age:"NA, same batch medium as 4-month-old" | Extracted Sample:Culture medium
F3Genotype:PTCC; PTEN-/-; TP53-/-; CDKN2A-/-; CDKN2B-/- | Age:1-month-old | Extracted Sample:Culture medium
F4Genotype:PTCC; PTEN-/-; TP53-/-; CDKN2A-/-; CDKN2B-/- | Age:1-month-old | Extracted Sample:Organoid
F5Genotype:PTCC; PTEN-/-; TP53-/-; CDKN2A-/-; CDKN2B-/- | Age:4-month-old | Extracted Sample:Culture medium
F6Genotype:PTCC; PTEN-/-; TP53-/-; CDKN2A-/-; CDKN2B-/- | Age:4-month-old | Extracted Sample:Organoid
F7Genotype:PTN; PTEN-/-; TP53-/-; NF1-/- | Age:1-month-old | Extracted Sample:Culture medium
F8Genotype:PTN; PTEN-/-; TP53-/-; NF1-/- | Age:1-month-old | Extracted Sample:Organoid
F9Genotype:PTN; PTEN-/-; TP53-/-; NF1-/- | Age:4-month-old | Extracted Sample:Culture medium
F10Genotype:PTN; PTEN-/-; TP53-/-; NF1-/- | Age:4-month-old | Extracted Sample:Organoid
F11Genotype:PT; PTEN-/-; TP53-/- | Age:1-month-old | Extracted Sample:Culture medium
F12Genotype:PT; PTEN-/-; TP53-/- | Age:1-month-old | Extracted Sample:Organoid
F13Genotype:PT; PTEN-/-; TP53-/- | Age:4-month-old | Extracted Sample:Culture medium
F14Genotype:PT; PTEN-/-; TP53-/- | Age:4-month-old | Extracted Sample:Organoid
F15Genotype:WT; wildtype | Age:1-month-old | Extracted Sample:Culture medium
F16Genotype:WT; wildtype | Age:1-month-old | Extracted Sample:Organoid
F17Genotype:WT; wildtype | Age:4-month-old | Extracted Sample:Culture medium
F18Genotype:WT; wildtype | Age:4-month-old | Extracted Sample:Organoid
Data matrix
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