Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST002287)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	sample_site:Intra \| strain:GP61 \| biologial_rep:1 \| technical_rep:1
F2	sample_site:Intra \| strain:GP61 \| biologial_rep:1 \| technical_rep:2
F3	sample_site:Intra \| strain:GP61 \| biologial_rep:4 \| technical_rep:1
F4	sample_site:Intra \| strain:GP61 \| biologial_rep:4 \| technical_rep:2
F5	sample_site:Intra \| strain:GP61 \| biologial_rep:4 \| technical_rep:3
F6	sample_site:Intra \| strain:GP61 \| biologial_rep:4 \| technical_rep:4
F7	sample_site:Intra \| strain:KO \| biologial_rep:1 \| technical_rep:1
F8	sample_site:Intra \| strain:KO \| biologial_rep:1 \| technical_rep:2
F9	sample_site:Intra \| strain:KO \| biologial_rep:4 \| technical_rep:1
F10	sample_site:Intra \| strain:KO \| biologial_rep:4 \| technical_rep:2
F11	sample_site:Intra \| strain:KO \| biologial_rep:4 \| technical_rep:3
F12	sample_site:Intra \| strain:KO \| biologial_rep:4 \| technical_rep:4
F13	sample_site:Intra \| strain:WT \| biologial_rep:1 \| technical_rep:1
F14	sample_site:Intra \| strain:WT \| biologial_rep:1 \| technical_rep:2
F15	sample_site:Intra \| strain:WT \| biologial_rep:4 \| technical_rep:1
F16	sample_site:Intra \| strain:WT \| biologial_rep:4 \| technical_rep:2
F17	sample_site:Intra \| strain:WT \| biologial_rep:4 \| technical_rep:3
F18	sample_site:Intra \| strain:WT \| biologial_rep:4 \| technical_rep:4
F19	sample_site:SN \| strain:GP61 \| biologial_rep:1 \| technical_rep:1
F20	sample_site:SN \| strain:GP61 \| biologial_rep:1 \| technical_rep:2
F21	sample_site:SN \| strain:GP61 \| biologial_rep:4 \| technical_rep:1
F22	sample_site:SN \| strain:GP61 \| biologial_rep:4 \| technical_rep:2
F23	sample_site:SN \| strain:GP61 \| biologial_rep:4 \| technical_rep:3
F24	sample_site:SN \| strain:GP61 \| biologial_rep:4 \| technical_rep:4
F25	sample_site:SN \| strain:KO \| biologial_rep:1 \| technical_rep:1
F26	sample_site:SN \| strain:KO \| biologial_rep:1 \| technical_rep:2
F27	sample_site:SN \| strain:KO \| biologial_rep:4 \| technical_rep:1
F28	sample_site:SN \| strain:KO \| biologial_rep:4 \| technical_rep:2
F29	sample_site:SN \| strain:KO \| biologial_rep:4 \| technical_rep:3
F30	sample_site:SN \| strain:KO \| biologial_rep:4 \| technical_rep:4
F31	sample_site:SN \| strain:WT \| biologial_rep:1 \| technical_rep:1
F32	sample_site:SN \| strain:WT \| biologial_rep:1 \| technical_rep:2
F33	sample_site:SN \| strain:WT \| biologial_rep:4 \| technical_rep:1
F34	sample_site:SN \| strain:WT \| biologial_rep:4 \| technical_rep:2
F35	sample_site:SN \| strain:WT \| biologial_rep:4 \| technical_rep:3
F36	sample_site:SN \| strain:WT \| biologial_rep:4 \| technical_rep:4

Data matrix