Clustering data with heatmap algorithm for (Study ST002381)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Factor_1 (substrate):3-OH butyrate | Factor_2 (bacteria):none | Factor_2 (time):T0
F2Factor_1 (substrate):3-OH butyrate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F3Factor_1 (substrate):3-OH butyrate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F4Factor_1 (substrate):3-OH butyrate | Factor_2 (bacteria):ΔSPO2573 | Factor_2 (time):Tfinal
F5Factor_1 (substrate):azelaic acid | Factor_2 (bacteria):none | Factor_2 (time):T0
F6Factor_1 (substrate):azelaic acid | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F7Factor_1 (substrate):azelaic acid | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F8Factor_1 (substrate):azelaic acid | Factor_2 (bacteria):ΔSPO1514 | Factor_2 (time):Tfinal
F9Factor_1 (substrate):Azeliac | Factor_2 (bacteria):none | Factor_2 (time):T0
F10Factor_1 (substrate):Azeliac | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F11Factor_1 (substrate):Azeliac | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F12Factor_1 (substrate):Azeliac | Factor_2 (bacteria):ΔSPO1514 | Factor_2 (time):Tfinal
F13Factor_1 (substrate):Blank | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F14Factor_1 (substrate):cadaverine | Factor_2 (bacteria):none | Factor_2 (time):T0
F15Factor_1 (substrate):cadaverine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F16Factor_1 (substrate):cadaverine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F17Factor_1 (substrate):cadaverine | Factor_2 (bacteria):ΔSPO3469 | Factor_2 (time):Tfinal
F18Factor_1 (substrate):carnitine | Factor_2 (bacteria):none | Factor_2 (time):T0
F19Factor_1 (substrate):carnitine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F20Factor_1 (substrate):carnitine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F21Factor_1 (substrate):carnitine | Factor_2 (bacteria):ΔSPO2995 | Factor_2 (time):Tfinal
F22Factor_1 (substrate):carnitine | Factor_2 (bacteria):ΔSPO2996 | Factor_2 (time):Tfinal
F23Factor_1 (substrate):choline | Factor_2 (bacteria):none | Factor_2 (time):T0
F24Factor_1 (substrate):Choline | Factor_2 (bacteria):none | Factor_2 (time):T0
F25Factor_1 (substrate):choline | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F26Factor_1 (substrate):Choline | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F27Factor_1 (substrate):choline | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F28Factor_1 (substrate):Choline | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F29Factor_1 (substrate):choline | Factor_2 (bacteria):ΔSPO1087 | Factor_2 (time):Tfinal
F30Factor_1 (substrate):Choline | Factor_2 (bacteria):ΔSPO1087 | Factor_2 (time):Tfinal
F31Factor_1 (substrate):citrate | Factor_2 (bacteria):none | Factor_2 (time):T0
F32Factor_1 (substrate):citrate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F33Factor_1 (substrate):citrate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F34Factor_1 (substrate):citrate | Factor_2 (bacteria):ΔSPO0184 | Factor_2 (time):Tfinal
F35Factor_1 (substrate):cysteate | Factor_2 (bacteria):none | Factor_2 (time):T0
F36Factor_1 (substrate):cysteate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F37Factor_1 (substrate):cysteate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F38Factor_1 (substrate):cysteate | Factor_2 (bacteria):ΔSPO3040 | Factor_2 (time):Tfinal
F39Factor_1 (substrate):cysteate | Factor_2 (bacteria):ΔSPO3041 | Factor_2 (time):Tfinal
F40Factor_1 (substrate):DHPS | Factor_2 (bacteria):none | Factor_2 (time):T0
F41Factor_1 (substrate):DHPS | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F42Factor_1 (substrate):DHPS | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F43Factor_1 (substrate):DHPS | Factor_2 (bacteria):ΔSPO0591a | Factor_2 (time):Tfinal
F44Factor_1 (substrate):DHPS | Factor_2 (bacteria):ΔSPO0591b | Factor_2 (time):Tfinal
F45Factor_1 (substrate):DMSP | Factor_2 (bacteria):none | Factor_2 (time):T0
F46Factor_1 (substrate):DMSP | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F47Factor_1 (substrate):DMSP | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F48Factor_1 (substrate):DMSP | Factor_2 (bacteria):ΔSPO3186 | Factor_2 (time):Tfinal
F49Factor_1 (substrate):DMSP | Factor_2 (bacteria):ΔSPO3187 | Factor_2 (time):Tfinal
F50Factor_1 (substrate):DMSP | Factor_2 (bacteria):ΔSPO3188 | Factor_2 (time):Tfinal
F51Factor_1 (substrate):ectoine | Factor_2 (bacteria):none | Factor_2 (time):T0
F52Factor_1 (substrate):ectoine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F53Factor_1 (substrate):ectoine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F54Factor_1 (substrate):ectoine | Factor_2 (bacteria):ΔSPO1147 | Factor_2 (time):Tfinal
F55Factor_1 (substrate):fumarate | Factor_2 (bacteria):none | Factor_2 (time):T0
F56Factor_1 (substrate):fumarate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F57Factor_1 (substrate):fumarate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F58Factor_1 (substrate):fumarate | Factor_2 (bacteria):ΔSPO2626 | Factor_2 (time):Tfinal
F59Factor_1 (substrate):fumarate | Factor_2 (bacteria):ΔSPO2628 | Factor_2 (time):Tfinal
F60Factor_1 (substrate):fumarate | Factor_2 (bacteria):ΔSPO2630 | Factor_2 (time):Tfinal
F61Factor_1 (substrate):GlcNac | Factor_2 (bacteria):none | Factor_2 (time):T0
F62Factor_1 (substrate):GlcNac | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F63Factor_1 (substrate):GlcNac | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F64Factor_1 (substrate):GlcNac | Factor_2 (bacteria):ΔSPO1839 | Factor_2 (time):Tfinal
F65Factor_1 (substrate):glucose | Factor_2 (bacteria):none | Factor_2 (time):T0
F66Factor_1 (substrate):glucose | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F67Factor_1 (substrate):glucose | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F68Factor_1 (substrate):glucose | Factor_2 (bacteria):ΔSPO0863 | Factor_2 (time):Tfinal
F69Factor_1 (substrate):glycerol | Factor_2 (bacteria):none | Factor_2 (time):T0
F70Factor_1 (substrate):glycerol | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F71Factor_1 (substrate):glycerol | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F72Factor_1 (substrate):glycerol | Factor_2 (bacteria):ΔSPO0608 | Factor_2 (time):Tfinal
F73Factor_1 (substrate):glycerol | Factor_2 (bacteria):ΔSPO0609 | Factor_2 (time):Tfinal
F74Factor_1 (substrate):glycerol | Factor_2 (bacteria):ΔSPO0610 | Factor_2 (time):Tfinal
F75Factor_1 (substrate):isethionate | Factor_2 (bacteria):none | Factor_2 (time):T0
F76Factor_1 (substrate):isethionate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F77Factor_1 (substrate):isethionate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F78Factor_1 (substrate):isethionate | Factor_2 (bacteria):ΔSPO2357 | Factor_2 (time):Tfinal
F79Factor_1 (substrate):isethionate | Factor_2 (bacteria):ΔSPO2358 | Factor_2 (time):Tfinal
F80Factor_1 (substrate):malate | Factor_2 (bacteria):none | Factor_2 (time):T0
F81Factor_1 (substrate):malate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F82Factor_1 (substrate):malate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F83Factor_1 (substrate):malate | Factor_2 (bacteria):ΔSPO2626 | Factor_2 (time):Tfinal
F84Factor_1 (substrate):malate | Factor_2 (bacteria):ΔSPO2628 | Factor_2 (time):Tfinal
F85Factor_1 (substrate):malate | Factor_2 (bacteria):ΔSPO2630 | Factor_2 (time):Tfinal
F86Factor_1 (substrate):putresceine | Factor_2 (bacteria):none | Factor_2 (time):T0
F87Factor_1 (substrate):putresceine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F88Factor_1 (substrate):putresceine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F89Factor_1 (substrate):putresceine | Factor_2 (bacteria):ΔSPO3469 | Factor_2 (time):Tfinal
F90Factor_1 (substrate):spermidine | Factor_2 (bacteria):none | Factor_2 (time):T0
F91Factor_1 (substrate):spermidine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F92Factor_1 (substrate):spermidine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F93Factor_1 (substrate):spermidine | Factor_2 (bacteria):ΔSPO3469 | Factor_2 (time):Tfinal
F94Factor_1 (substrate):succinate | Factor_2 (bacteria):none | Factor_2 (time):T0
F95Factor_1 (substrate):succinate | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F96Factor_1 (substrate):succinate | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F97Factor_1 (substrate):succinate | Factor_2 (bacteria):ΔSPO2626 | Factor_2 (time):Tfinal
F98Factor_1 (substrate):succinate | Factor_2 (bacteria):ΔSPO2628 | Factor_2 (time):Tfinal
F99Factor_1 (substrate):succinate | Factor_2 (bacteria):ΔSPO2630 | Factor_2 (time):Tfinal
F100Factor_1 (substrate):taurine | Factor_2 (bacteria):none | Factor_2 (time):T0
F101Factor_1 (substrate):Taurine | Factor_2 (bacteria):none | Factor_2 (time):T0
F102Factor_1 (substrate):taurine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F103Factor_1 (substrate):Taurine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F104Factor_1 (substrate):taurine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F105Factor_1 (substrate):Taurine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F106Factor_1 (substrate):taurine | Factor_2 (bacteria):ΔSPO0674 | Factor_2 (time):Tfinal
F107Factor_1 (substrate):Taurine | Factor_2 (bacteria):ΔSPO0674 | Factor_2 (time):Tfinal
F108Factor_1 (substrate):taurine | Factor_2 (bacteria):ΔSPO0676 | Factor_2 (time):Tfinal
F109Factor_1 (substrate):Taurine | Factor_2 (bacteria):ΔSPO0676 | Factor_2 (time):Tfinal
F110Factor_1 (substrate):thymidine | Factor_2 (bacteria):none | Factor_2 (time):T0
F111Factor_1 (substrate):thymidine | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F112Factor_1 (substrate):thymidine | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F113Factor_1 (substrate):thymidine | Factor_2 (bacteria):ΔSPO0378 | Factor_2 (time):Tfinal
F114Factor_1 (substrate):thymidine | Factor_2 (bacteria):ΔSPO0379 | Factor_2 (time):Tfinal
F115Factor_1 (substrate):xylose | Factor_2 (bacteria):none | Factor_2 (time):T0
F116Factor_1 (substrate):xylose | Factor_2 (bacteria):none | Factor_2 (time):Tfinal
F117Factor_1 (substrate):xylose | Factor_2 (bacteria):pooled-BarSeq | Factor_2 (time):Tfinal
F118Factor_1 (substrate):xylose | Factor_2 (bacteria):ΔSPO0863 | Factor_2 (time):Tfinal
Data matrix
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