Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST002465)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Site:Cecum_content \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F2	Site:Cecum_content \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F3	Site:Cecum_content \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F4	Site:Cecum_content \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F5	Site:Cecum_content \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F6	Site:Cecum_content \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F7	Site:Cecum_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F8	Site:Cecum_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F9	Site:Cecum_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F10	Site:Cecum_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F11	Site:Cecum_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F12	Site:Cecum_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F13	Site:Cecum_content \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F14	Site:Cecum_content \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F15	Site:Cecum_content \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F16	Site:Cecum_content \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F17	Site:Cecum_content \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F18	Site:Cecum_content \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F19	Site:Colon_content \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F20	Site:Colon_content \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F21	Site:Colon_content \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F22	Site:Colon_content \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F23	Site:Colon_content \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F24	Site:Colon_content \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F25	Site:Colon_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F26	Site:Colon_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F27	Site:Colon_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F28	Site:Colon_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F29	Site:Colon_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F30	Site:Colon_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F31	Site:Colon_content \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F32	Site:Colon_content \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F33	Site:Colon_content \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F34	Site:Colon_content \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F35	Site:Colon_content \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F36	Site:Colon_content \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F37	Site:Ileum_content \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F38	Site:Ileum_content \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F39	Site:Ileum_content \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F40	Site:Ileum_content \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F41	Site:Ileum_content \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F42	Site:Ileum_content \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F43	Site:Ileum_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F44	Site:Ileum_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F45	Site:Ileum_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F46	Site:Ileum_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F47	Site:Ileum_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F48	Site:Ileum_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F49	Site:Ileum_content \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F50	Site:Ileum_content \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F51	Site:Ileum_content \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F52	Site:Ileum_content \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F53	Site:Ileum_content \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F54	Site:Ileum_content \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F55	Site:Jejunum_content \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F56	Site:Jejunum_content \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F57	Site:Jejunum_content \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F58	Site:Jejunum_content \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F59	Site:Jejunum_content \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F60	Site:Jejunum_content \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F61	Site:Jejunum_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F62	Site:Jejunum_content \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F63	Site:Jejunum_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F64	Site:Jejunum_content \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F65	Site:Jejunum_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F66	Site:Jejunum_content \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F67	Site:Jejunum_content \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F68	Site:Jejunum_content \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F69	Site:Jejunum_content \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F70	Site:Jejunum_content \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F71	Site:Jejunum_content \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F72	Site:Jejunum_content \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F73	Site:Liver \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F74	Site:Liver \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F75	Site:Liver \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F76	Site:Liver \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F77	Site:Liver \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F78	Site:Liver \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F79	Site:Liver \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F80	Site:Liver \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F81	Site:Liver \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F82	Site:Liver \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F83	Site:Liver \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F84	Site:Liver \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F85	Site:Liver \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F86	Site:Liver \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F87	Site:Liver \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F88	Site:Liver \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F89	Site:Liver \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F90	Site:Liver \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F91	Site:Peritoneal_fluid_lavage \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F92	Site:Peritoneal_fluid_lavage \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F93	Site:Peritoneal_fluid_lavage \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F94	Site:Peritoneal_fluid_lavage \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F95	Site:Peritoneal_fluid_lavage \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F96	Site:Peritoneal_fluid_lavage \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F97	Site:Peritoneal_fluid_lavage \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F98	Site:Peritoneal_fluid_lavage \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F99	Site:Peritoneal_fluid_lavage \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F100	Site:Peritoneal_fluid_lavage \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F101	Site:Peritoneal_fluid_lavage \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F102	Site:Peritoneal_fluid_lavage \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F103	Site:Peritoneal_fluid_lavage \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F104	Site:Peritoneal_fluid_lavage \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F105	Site:Peritoneal_fluid_lavage \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F106	Site:Peritoneal_fluid_lavage \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F107	Site:Peritoneal_fluid_lavage \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F108	Site:Peritoneal_fluid_lavage \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F109	Site:Serum \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F110	Site:Serum \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F111	Site:Serum \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F112	Site:Serum \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F113	Site:Serum \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F114	Site:Serum \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F115	Site:Serum \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F116	Site:Serum \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F117	Site:Serum \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F118	Site:Serum \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F119	Site:Serum \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F120	Site:Serum \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F121	Site:Serum \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F122	Site:Serum \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F123	Site:Serum \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F124	Site:Serum \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F125	Site:Serum \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F126	Site:Serum \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F127	Site:Spleen \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F128	Site:Spleen \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F129	Site:Spleen \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F130	Site:Spleen \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F131	Site:Spleen \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F132	Site:Spleen \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F133	Site:Spleen \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F134	Site:Spleen \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F135	Site:Spleen \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F136	Site:Spleen \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F137	Site:Spleen \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F138	Site:Spleen \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F139	Site:Spleen \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F140	Site:Spleen \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F141	Site:Spleen \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F142	Site:Spleen \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F143	Site:Spleen \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F144	Site:Spleen \| Microbiota:spf \| Age(weeks):8 \| Sex:M
F145	Site:Urine \| Microbiota:gf \| Age(weeks):12 \| Sex:F
F146	Site:Urine \| Microbiota:gf \| Age(weeks):12 \| Sex:M
F147	Site:Urine \| Microbiota:gf \| Age(weeks):3 \| Sex:F
F148	Site:Urine \| Microbiota:gf \| Age(weeks):3 \| Sex:M
F149	Site:Urine \| Microbiota:gf \| Age(weeks):8 \| Sex:F
F150	Site:Urine \| Microbiota:gf \| Age(weeks):8 \| Sex:M
F151	Site:Urine \| Microbiota:sdm \| Age(weeks):12 \| Sex:F
F152	Site:Urine \| Microbiota:sdm \| Age(weeks):12 \| Sex:M
F153	Site:Urine \| Microbiota:sdm \| Age(weeks):3 \| Sex:F
F154	Site:Urine \| Microbiota:sdm \| Age(weeks):3 \| Sex:M
F155	Site:Urine \| Microbiota:sdm \| Age(weeks):8 \| Sex:F
F156	Site:Urine \| Microbiota:sdm \| Age(weeks):8 \| Sex:M
F157	Site:Urine \| Microbiota:spf \| Age(weeks):12 \| Sex:F
F158	Site:Urine \| Microbiota:spf \| Age(weeks):12 \| Sex:M
F159	Site:Urine \| Microbiota:spf \| Age(weeks):3 \| Sex:F
F160	Site:Urine \| Microbiota:spf \| Age(weeks):3 \| Sex:M
F161	Site:Urine \| Microbiota:spf \| Age(weeks):8 \| Sex:F
F162	Site:Urine \| Microbiota:spf \| Age(weeks):8 \| Sex:M

Data matrix