Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST002510)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Strain:Ctrl \| Strain name:Ctrl_B3 \| Condition:GL_Ctrl_B3 \| PlateNum:1
F2	Strain:Ctrl \| Strain name:Ctrl_B3 \| Condition:GL_Ctrl_B3 \| PlateNum:2
F3	Strain:Ctrl \| Strain name:Ctrl_B3 \| Condition:GL_Ctrl_B3 \| PlateNum:3
F4	Strain:Ctrl \| Strain name:Ctrl_D9 \| Condition:GL_Ctrl_D9 \| PlateNum:2
F5	Strain:Ctrl \| Strain name:Ctrl_F5 \| Condition:GL_Ctrl_F5 \| PlateNum:1
F6	Strain:Ctrl \| Strain name:Ctrl_F5 \| Condition:GL_Ctrl_F5 \| PlateNum:2
F7	Strain:Ctrl \| Strain name:Ctrl_F5 \| Condition:GL_Ctrl_F5 \| PlateNum:3
F8	Strain:Ctrl \| Strain name:Ctrl_G12 \| Condition:GL_Ctrl_G12 \| PlateNum:1
F9	Strain:Ctrl \| Strain name:Ctrl_G12 \| Condition:GL_Ctrl_G12 \| PlateNum:2
F10	Strain:Ctrl \| Strain name:Ctrl_G12 \| Condition:GL_Ctrl_G12 \| PlateNum:3
F11	Strain:PTJ0086 \| Strain name:Eggerthella_lenta_1160AFAABroad \| Condition:GL \| PlateNum:1
F12	Strain:PTJ0086 \| Strain name:Eggerthella_lenta_1160AFAABroad \| Condition:GL \| PlateNum:2
F13	Strain:PTJ0086 \| Strain name:Eggerthella_lenta_1160AFAABroad \| Condition:GL \| PlateNum:3
F14	Strain:PTJ0087 \| Strain name:Eggerthella_lenta_1356FAA \| Condition:GL \| PlateNum:1
F15	Strain:PTJ0087 \| Strain name:Eggerthella_lenta_1356FAA \| Condition:GL \| PlateNum:2
F16	Strain:PTJ0087 \| Strain name:Eggerthella_lenta_1356FAA \| Condition:GL \| PlateNum:3
F17	Strain:PTJ0089 \| Strain name:Eggerthella_lenta_11C \| Condition:GL \| PlateNum:1
F18	Strain:PTJ0089 \| Strain name:Eggerthella_lenta_11C \| Condition:GL \| PlateNum:3
F19	Strain:PTJ0090 \| Strain name:Eggerthella_lenta_14A \| Condition:GL \| PlateNum:1
F20	Strain:PTJ0090 \| Strain name:Eggerthella_lenta_14A \| Condition:GL \| PlateNum:3
F21	Strain:PTJ0092 \| Strain name:Eggerthella_lenta_22C \| Condition:GL \| PlateNum:1
F22	Strain:PTJ0092 \| Strain name:Eggerthella_lenta_22C \| Condition:GL \| PlateNum:2
F23	Strain:PTJ0092 \| Strain name:Eggerthella_lenta_22C \| Condition:GL \| PlateNum:3
F24	Strain:PTJ0093 \| Strain name:Eggerthella_lenta_28B \| Condition:GL \| PlateNum:1
F25	Strain:PTJ0093 \| Strain name:Eggerthella_lenta_28B \| Condition:GL \| PlateNum:2
F26	Strain:PTJ0093 \| Strain name:Eggerthella_lenta_28B \| Condition:GL \| PlateNum:3
F27	Strain:PTJ0109 \| Strain name:Eggerthella_lenta_DSM11767 \| Condition:GL \| PlateNum:1
F28	Strain:PTJ0109 \| Strain name:Eggerthella_lenta_DSM11767 \| Condition:GL \| PlateNum:2
F29	Strain:PTJ0109 \| Strain name:Eggerthella_lenta_DSM11767 \| Condition:GL \| PlateNum:3
F30	Strain:PTJ0110 \| Strain name:Eggerthella_lenta_DSM11863 \| Condition:GL \| PlateNum:1
F31	Strain:PTJ0110 \| Strain name:Eggerthella_lenta_DSM11863 \| Condition:GL \| PlateNum:2
F32	Strain:PTJ0110 \| Strain name:Eggerthella_lenta_DSM11863 \| Condition:GL \| PlateNum:3
F33	Strain:PTJ0111 \| Strain name:Eggerthella_lenta_DSM15644 \| Condition:GL \| PlateNum:1
F34	Strain:PTJ0111 \| Strain name:Eggerthella_lenta_DSM15644 \| Condition:GL \| PlateNum:2
F35	Strain:PTJ0111 \| Strain name:Eggerthella_lenta_DSM15644 \| Condition:GL \| PlateNum:3
F36	Strain:PTJ0112 \| Strain name:Eggerthella_sinensis_DSM16107 \| Condition:GL \| PlateNum:1
F37	Strain:PTJ0112 \| Strain name:Eggerthella_sinensis_DSM16107 \| Condition:GL \| PlateNum:2
F38	Strain:PTJ0112 \| Strain name:Eggerthella_sinensis_DSM16107 \| Condition:GL \| PlateNum:3
F39	Strain:PTJ0166 \| Strain name:Eggerthella_lenta_UCSF2243 \| Condition:GL \| PlateNum:1
F40	Strain:PTJ0166 \| Strain name:Eggerthella_lenta_UCSF2243 \| Condition:GL \| PlateNum:2
F41	Strain:PTJ0166 \| Strain name:Eggerthella_lenta_UCSF2243 \| Condition:GL \| PlateNum:3
F42	Strain:PTJ0169 \| Strain name:Eggerthella_lenta_Valencia \| Condition:GL \| PlateNum:1
F43	Strain:PTJ0169 \| Strain name:Eggerthella_lenta_Valencia \| Condition:GL \| PlateNum:2
F44	Strain:PTJ0169 \| Strain name:Eggerthella_lenta_Valencia \| Condition:GL \| PlateNum:3
F45	Strain:PTJ0170 \| Strain name:Eggerthella_lenta_AN51LG \| Condition:GL \| PlateNum:1
F46	Strain:PTJ0170 \| Strain name:Eggerthella_lenta_AN51LG \| Condition:GL \| PlateNum:2
F47	Strain:PTJ0170 \| Strain name:Eggerthella_lenta_AN51LG \| Condition:GL \| PlateNum:3
F48	Strain:PTJ0171 \| Strain name:Eggerthella_lenta_MR1n12 \| Condition:GL \| PlateNum:1
F49	Strain:PTJ0171 \| Strain name:Eggerthella_lenta_MR1n12 \| Condition:GL \| PlateNum:2
F50	Strain:PTJ0171 \| Strain name:Eggerthella_lenta_MR1n12 \| Condition:GL \| PlateNum:3
F51	Strain:PTJ0173 \| Strain name:Eggerthella_lenta_326I6NA \| Condition:GL \| PlateNum:2
F52	Strain:PTJ0173 \| Strain name:Eggerthella_lenta_326I6NA \| Condition:GL \| PlateNum:3
F53	Strain:PTJ0174 \| Strain name:Eggerthella_lenta_AB8n2 \| Condition:GL \| PlateNum:1
F54	Strain:PTJ0174 \| Strain name:Eggerthella_lenta_AB8n2 \| Condition:GL \| PlateNum:3
F55	Strain:PTJ0175 \| Strain name:Eggerthella_lenta_AB12n2 \| Condition:GL \| PlateNum:1
F56	Strain:PTJ0175 \| Strain name:Eggerthella_lenta_AB12n2 \| Condition:GL \| PlateNum:2
F57	Strain:PTJ0175 \| Strain name:Eggerthella_lenta_AB12n2 \| Condition:GL \| PlateNum:3
F58	Strain:PTJ0176 \| Strain name:Eggerthella_lenta_CC82BHI2 \| Condition:GL \| PlateNum:1
F59	Strain:PTJ0176 \| Strain name:Eggerthella_lenta_CC82BHI2 \| Condition:GL \| PlateNum:2
F60	Strain:PTJ0176 \| Strain name:Eggerthella_lenta_CC82BHI2 \| Condition:GL \| PlateNum:3
F61	Strain:PTJ0177 \| Strain name:Eggerthella_lenta_RC46F \| Condition:GL \| PlateNum:1
F62	Strain:PTJ0177 \| Strain name:Eggerthella_lenta_RC46F \| Condition:GL \| PlateNum:2
F63	Strain:PTJ0177 \| Strain name:Eggerthella_lenta_RC46F \| Condition:GL \| PlateNum:3
F64	Strain:PTJ0178 \| Strain name:Eggerthella_lenta_CC75D52 \| Condition:GL \| PlateNum:1
F65	Strain:PTJ0178 \| Strain name:Eggerthella_lenta_CC75D52 \| Condition:GL \| PlateNum:2
F66	Strain:PTJ0178 \| Strain name:Eggerthella_lenta_CC75D52 \| Condition:GL \| PlateNum:3
F67	Strain:PTJ0179 \| Strain name:Eggerthella_lenta_CC86D54 \| Condition:GL \| PlateNum:1
F68	Strain:PTJ0179 \| Strain name:Eggerthella_lenta_CC86D54 \| Condition:GL \| PlateNum:2
F69	Strain:PTJ0179 \| Strain name:Eggerthella_lenta_CC86D54 \| Condition:GL \| PlateNum:3
F70	Strain:PTJ0180 \| Strain name:Eggerthella_lenta_W1BHI6 \| Condition:GL \| PlateNum:1
F71	Strain:PTJ0180 \| Strain name:Eggerthella_lenta_W1BHI6 \| Condition:GL \| PlateNum:2
F72	Strain:PTJ0180 \| Strain name:Eggerthella_lenta_W1BHI6 \| Condition:GL \| PlateNum:3
F73	Strain:PTJ0237 \| Strain name:Eggerthella_lenta_A2 \| Condition:GL \| PlateNum:1
F74	Strain:PTJ0237 \| Strain name:Eggerthella_lenta_A2 \| Condition:GL \| PlateNum:2
F75	Strain:PTJ0237 \| Strain name:Eggerthella_lenta_A2 \| Condition:GL \| PlateNum:3
F76	Strain:PTJ0240 \| Strain name:Eggerthella_lenta_ATCC25559 \| Condition:GL \| PlateNum:1
F77	Strain:PTJ0240 \| Strain name:Eggerthella_lenta_ATCC25559 \| Condition:GL \| PlateNum:2
F78	Strain:PTJ0240 \| Strain name:Eggerthella_lenta_ATCC25559 \| Condition:GL \| PlateNum:3
F79	Strain:PTJ0261 \| Strain name:Eggerthella_lenta_DSM2243D \| Condition:GL \| PlateNum:1
F80	Strain:PTJ0261 \| Strain name:Eggerthella_lenta_DSM2243D \| Condition:GL \| PlateNum:2
F81	Strain:PTJ0261 \| Strain name:Eggerthella_lenta_DSM2243D \| Condition:GL \| PlateNum:3
F82	Strain:PTJ0289 \| Strain name:Eggerthella_lenta_ELUC2 \| Condition:GL \| PlateNum:1
F83	Strain:PTJ0289 \| Strain name:Eggerthella_lenta_ELUC2 \| Condition:GL \| PlateNum:2
F84	Strain:PTJ0289 \| Strain name:Eggerthella_lenta_ELUC2 \| Condition:GL \| PlateNum:3
F85	Strain:PTJ0290 \| Strain name:Eggerthella_lenta_ELUC5 \| Condition:GL \| PlateNum:1
F86	Strain:PTJ0290 \| Strain name:Eggerthella_lenta_ELUC5 \| Condition:GL \| PlateNum:2
F87	Strain:PTJ0290 \| Strain name:Eggerthella_lenta_ELUC5 \| Condition:GL \| PlateNum:3
F88	Strain:PTJ0295 \| Strain name:Eggerthella_lenta_RJX1627 \| Condition:GL \| PlateNum:1
F89	Strain:PTJ0295 \| Strain name:Eggerthella_lenta_RJX1627 \| Condition:GL \| PlateNum:2
F90	Strain:PTJ0295 \| Strain name:Eggerthella_lenta_RJX1627 \| Condition:GL \| PlateNum:3
F91	Strain:PTJ0296 \| Strain name:Eggerthella_lenta_RJX1626 \| Condition:GL \| PlateNum:1
F92	Strain:PTJ0296 \| Strain name:Eggerthella_lenta_RJX1626 \| Condition:GL \| PlateNum:2
F93	Strain:PTJ0296 \| Strain name:Eggerthella_lenta_RJX1626 \| Condition:GL \| PlateNum:3
F94	Strain:PTJ0297 \| Strain name:Eggerthella_lenta_SECOmt75m2 \| Condition:GL \| PlateNum:1
F95	Strain:PTJ0297 \| Strain name:Eggerthella_lenta_SECOmt75m2 \| Condition:GL \| PlateNum:2
F96	Strain:PTJ0297 \| Strain name:Eggerthella_lenta_SECOmt75m2 \| Condition:GL \| PlateNum:3
F97	Strain:- \| Strain name:- \| Condition:- \| PlateNum:-

Data matrix