Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST002789)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample_type:Blank \| Station:NA \| Depth:NA
F2	Sample_type:QC Pooled \| Station:NA \| Depth:NA
F3	Sample_type:Sample \| Station:10 \| Depth:DCM
F4	Sample_type:Sample \| Station:10 \| Depth:Deep
F5	Sample_type:Sample \| Station:10 \| Depth:Surface
F6	Sample_type:Sample \| Station:11 \| Depth:DCM
F7	Sample_type:Sample \| Station:11 \| Depth:Deep
F8	Sample_type:Sample \| Station:11 \| Depth:Surface
F9	Sample_type:Sample \| Station:12 \| Depth:DCM
F10	Sample_type:Sample \| Station:12 \| Depth:Deep
F11	Sample_type:Sample \| Station:12 \| Depth:Surface
F12	Sample_type:Sample \| Station:13 \| Depth:DCM
F13	Sample_type:Sample \| Station:13 \| Depth:Deep
F14	Sample_type:Sample \| Station:13 \| Depth:Surface
F15	Sample_type:Sample \| Station:14 \| Depth:DCM
F16	Sample_type:Sample \| Station:14 \| Depth:Deep
F17	Sample_type:Sample \| Station:14 \| Depth:Surface
F18	Sample_type:Sample \| Station:4 \| Depth:DCM
F19	Sample_type:Sample \| Station:4 \| Depth:Deep
F20	Sample_type:Sample \| Station:4 \| Depth:Surface
F21	Sample_type:Sample \| Station:5 \| Depth:DCM
F22	Sample_type:Sample \| Station:5 \| Depth:Deep
F23	Sample_type:Sample \| Station:5 \| Depth:Surface
F24	Sample_type:Sample \| Station:6 \| Depth:DCM
F25	Sample_type:Sample \| Station:6 \| Depth:Deep
F26	Sample_type:Sample \| Station:6 \| Depth:Surface
F27	Sample_type:Sample \| Station:7 \| Depth:DCM
F28	Sample_type:Sample \| Station:7 \| Depth:Deep
F29	Sample_type:Sample \| Station:7 \| Depth:Surface
F30	Sample_type:Sample \| Station:8 \| Depth:DCM
F31	Sample_type:Sample \| Station:8 \| Depth:Deep
F32	Sample_type:Sample \| Station:8 \| Depth:Surface
F33	Sample_type:Sample \| Station:9 \| Depth:DCM
F34	Sample_type:Sample \| Station:9 \| Depth:Deep
F35	Sample_type:Sample \| Station:9 \| Depth:Surface
F36	Sample_type:Sample \| Station:L1 \| Depth:DCM
F37	Sample_type:Sample \| Station:L1 \| Depth:DCMless10m
F38	Sample_type:Sample \| Station:L1 \| Depth:DCMless20m
F39	Sample_type:Sample \| Station:L1 \| Depth:DCMplus10m
F40	Sample_type:Sample \| Station:L1 \| Depth:DCMplus20m
F41	Sample_type:Sample \| Station:L2 \| Depth:DCM
F42	Sample_type:Sample \| Station:L2 \| Depth:DCMless10m
F43	Sample_type:Sample \| Station:L2 \| Depth:DCMless20m
F44	Sample_type:Sample \| Station:L2 \| Depth:DCMplus10m
F45	Sample_type:Sample \| Station:L2 \| Depth:DCMplus20m
F46	Sample_type:Standard mix \| Station:NA \| Depth:NA

Data matrix