Clustering data with heatmap algorithm for (Study ST002832)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Genotype:bacterial community | Treatment:15-member community timepoint 1
F2Genotype:bacterial community | Treatment:15-member community timepoint 10
F3Genotype:bacterial community | Treatment:15-member community timepoint 11
F4Genotype:bacterial community | Treatment:15-member community timepoint 12
F5Genotype:bacterial community | Treatment:15-member community timepoint 13
F6Genotype:bacterial community | Treatment:15-member community timepoint 14
F7Genotype:bacterial community | Treatment:15-member community timepoint 15
F8Genotype:bacterial community | Treatment:15-member community timepoint 16
F9Genotype:bacterial community | Treatment:15-member community timepoint 17
F10Genotype:bacterial community | Treatment:15-member community timepoint 18
F11Genotype:bacterial community | Treatment:15-member community timepoint 19
F12Genotype:bacterial community | Treatment:15-member community timepoint 2
F13Genotype:bacterial community | Treatment:15-member community timepoint 20
F14Genotype:bacterial community | Treatment:15-member community timepoint 21
F15Genotype:bacterial community | Treatment:15-member community timepoint 22
F16Genotype:bacterial community | Treatment:15-member community timepoint 23
F17Genotype:bacterial community | Treatment:15-member community timepoint 3
F18Genotype:bacterial community | Treatment:15-member community timepoint 4
F19Genotype:bacterial community | Treatment:15-member community timepoint 5
F20Genotype:bacterial community | Treatment:15-member community timepoint 6
F21Genotype:bacterial community | Treatment:15-member community timepoint 7
F22Genotype:bacterial community | Treatment:15-member community timepoint 8
F23Genotype:bacterial community | Treatment:15-member community timepoint 9
F24Genotype:bacterial community | Treatment:9-to-1 fresh BHI and Escherichia fergusonii-spent media mix
F25Genotype:bacterial community | Treatment:9-to-1 fresh BHI and Escherichia fergusonii-spent media mix spent by Bacteroides thetaiotaomicron
F26Genotype:bacterial community | Treatment:9-to-1 fresh BHI and Escherichia fergusonii-spent media mix spent by Parabacteroides distasonis
F27Genotype:bacterial community | Treatment:BHI fresh
F28Genotype:bacterial community | Treatment:BHI fresh timecourse experiment
F29Genotype:bacterial community | Treatment:BHI-heme
F30Genotype:bacterial community | Treatment:BHI-heme spent by Bacteroides thetaiotaomicron
F31Genotype:bacterial community | Treatment:BHI-heme spent by Parabacteroides distasonis
F32Genotype:bacterial community | Treatment:BHI spent by Bacteroides fragilis
F33Genotype:bacterial community | Treatment:BHI spent by Bacteroides thetaiotaomicron
F34Genotype:bacterial community | Treatment:BHI spent by Bacteroides thetaiotaomicron additional experiment
F35Genotype:bacterial community | Treatment:BHI spent by Bacteroides uniformis
F36Genotype:bacterial community | Treatment:BHI spent by Blautia producta
F37Genotype:bacterial community | Treatment:BHI spent by Clostridium clostridioforme
F38Genotype:bacterial community | Treatment:BHI spent by Clostridium hathewayi
F39Genotype:bacterial community | Treatment:BHI spent by Clostridium hylemonae
F40Genotype:bacterial community | Treatment:BHI spent by Clostridium scindens
F41Genotype:bacterial community | Treatment:BHI spent by Clostridium symbiosum
F42Genotype:bacterial community | Treatment:BHI spent by Enterococcus faecalis
F43Genotype:bacterial community | Treatment:BHI spent by Enterococcus faecium
F44Genotype:bacterial community | Treatment:BHI spent by Enterococcus hirae
F45Genotype:bacterial community | Treatment:BHI spent by Escherichia fergusonii
F46Genotype:bacterial community | Treatment:BHI spent by Escherichia fergusonii additional experiment
F47Genotype:bacterial community | Treatment:BHI spent by Flavonifractor plautii
F48Genotype:bacterial community | Treatment:BHI spent by Parabacteroides distasonis
F49Genotype:bacterial community | Treatment:BHI spent by Parabacteroides distasonis additional experiment
F50Genotype:bacterial community | Treatment:Escherichia fergusonii-spent media spent by Bacteroides thetaiotaomicron
F51Genotype:bacterial community | Treatment:Escherichia fergusonii-spent media spent by Parabacteroides distasonis
F52Genotype:bacterial community | Treatment:mGAM fresh
F53Genotype:bacterial community | Treatment:mGAM spent by Bacteroides fragilis
F54Genotype:bacterial community | Treatment:mGAM spent by Bacteroides thetaiotaomicron
F55Genotype:bacterial community | Treatment:mGAM spent by Bacteroides uniformis
F56Genotype:bacterial community | Treatment:mGAM spent by Blautia producta
F57Genotype:bacterial community | Treatment:mGAM spent by Clostridium clostridioforme
F58Genotype:bacterial community | Treatment:mGAM spent by Clostridium hathewayi
F59Genotype:bacterial community | Treatment:mGAM spent by Clostridium hylemonae
F60Genotype:bacterial community | Treatment:mGAM spent by Clostridium scindens
F61Genotype:bacterial community | Treatment:mGAM spent by Clostridium symbiosum
F62Genotype:bacterial community | Treatment:mGAM spent by Enterococcus faecalis
F63Genotype:bacterial community | Treatment:mGAM spent by Enterococcus faecium
F64Genotype:bacterial community | Treatment:mGAM spent by Enterococcus hirae
F65Genotype:bacterial community | Treatment:mGAM spent by Escherichia fergusonii
F66Genotype:bacterial community | Treatment:mGAM spent by Flavonifractor plautii
F67Genotype:bacterial community | Treatment:mGAM spent by Parabacteroides distasonis
Data matrix
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