Clustering data with heatmap algorithm for (Study ST003078)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):0 | Replica:1
F2Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):0 | Replica:2
F3Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):0 | Replica:3
F4Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):10 | Replica:2
F5Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):10 | Replica:3
F6Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):2 | Replica:1
F7Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):2 | Replica:2
F8Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):2 | Replica:3
F9Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):3 | Replica:1
F10Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):4 | Replica:1
F11Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):4 | Replica:2
F12Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):4 | Replica:3
F13Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):5 | Replica:1
F14Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):5 | Replica:2
F15Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):5 | Replica:3
F16Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):6 | Replica:1
F17Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):6 | Replica:2
F18Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):6 | Replica:3
F19Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):7 | Replica:2
F20Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):7 | Replica:3
F21Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):8 | Replica:1
F22Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):8 | Replica:2
F23Sample source:19N | Strain:19N | initial pH:5.5 | Time (h):8 | Replica:3
F24Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):0 | Replica:1
F25Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):0 | Replica:2
F26Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):0 | Replica:3
F27Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):10 | Replica:1
F28Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):10 | Replica:2
F29Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):11 | Replica:3
F30Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):1 | Replica:3
F31Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):2 | Replica:1
F32Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):2 | Replica:2
F33Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):3 | Replica:1
F34Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):3 | Replica:3
F35Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):4 | Replica:1
F36Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):4 | Replica:2
F37Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):4 | Replica:3
F38Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):5 | Replica:1
F39Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):5 | Replica:2
F40Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):5 | Replica:3
F41Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):6 | Replica:1
F42Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):6 | Replica:2
F43Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):6 | Replica:3
F44Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):7 | Replica:2
F45Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):7 | Replica:3
F46Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):8 | Replica:1
F47Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):8 | Replica:2
F48Sample source:19N | Strain:19N | initial pH:7.4 | Time (h):9 | Replica:3
F49Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):0 | Replica:1
F50Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):0 | Replica:2
F51Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):0 | Replica:3
F52Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):10 | Replica:2
F53Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):10 | Replica:3
F54Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):2 | Replica:1
F55Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):2 | Replica:2
F56Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):2 | Replica:3
F57Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):3 | Replica:1
F58Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):3 | Replica:2
F59Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):3 | Replica:3
F60Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):4 | Replica:1
F61Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):4 | Replica:2
F62Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):4 | Replica:3
F63Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):5 | Replica:1
F64Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):5 | Replica:2
F65Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):5 | Replica:3
F66Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):6 | Replica:2
F67Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):6 | Replica:3
F68Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):7 | Replica:1
F69Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):7 | Replica:2
F70Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):7 | Replica:3
F71Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):8 | Replica:2
F72Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):8 | Replica:3
F73Sample source:ICE25 | Strain:ICE25 | initial pH:5.5 | Time (h):9 | Replica:1
F74Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):0 | Replica:1
F75Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):0 | Replica:2
F76Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):0 | Replica:3
F77Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):10 | Replica:1
F78Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):10 | Replica:2
F79Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):10 | Replica:3
F80Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):2 | Replica:1
F81Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):2 | Replica:2
F82Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):2 | Replica:3
F83Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):4 | Replica:1
F84Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):4 | Replica:2
F85Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):4 | Replica:3
F86Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):5 | Replica:1
F87Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):5 | Replica:2
F88Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):5 | Replica:3
F89Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):6 | Replica:1
F90Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):6 | Replica:2
F91Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):6 | Replica:3
F92Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):7 | Replica:1
F93Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):7 | Replica:2
F94Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):7 | Replica:3
F95Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):8 | Replica:1
F96Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):8 | Replica:2
F97Sample source:ICE25 | Strain:ICE25 | initial pH:7.4 | Time (h):8 | Replica:3
Data matrix
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