Clustering data with heatmap algorithm for (Study ST003149)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water
F2	Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia
F3	Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water
F4	Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group
F5	Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group
F6	Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF
F7	Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle
F8	Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF
F9	Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle
F10	Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group
F11	Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group
F12	Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF
F13	Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle
F14	Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF
F15	Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle
F16	Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF
F17	Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle

Data matrix