Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003315)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F2	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F3	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F4	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F5	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F6	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F7	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F8	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F9	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F10	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F11	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F12	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F13	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F14	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F15	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F16	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F17	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F18	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F19	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F20	Sample source:Plasma \| Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F21	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F22	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F23	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F24	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F25	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Fulvestrant
F26	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Fulvestrant
F27	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F28	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F29	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F30	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F31	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F32	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F33	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F34	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F35	Sample source:Plasma \| Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F36	Sample source:Plasma \| Histology :not available \| Lab Ki67 Group :not available \| PEPI Score :not available \| Visit :Baseline \| Arm :not enrolled, baseline only
F37	Sample source:Plasma \| Histology :Other \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F38	Sample source:Plasma \| Histology :Other \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F39	Sample source:Plasma \| Histology :Other \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F40	Sample source:Plasma \| Histology :Other \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F41	Sample source:Plasma \| Histology :Other \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F42	Sample source:Plasma \| Histology :Other \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination

Data matrix