Clustering data with heatmap algorithm for (Study ST003521)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample source:Combination_1h | raw file name:COM_1h_1
F2	Sample source:Combination_1h | raw file name:COM_1h_2
F3	Sample source:Combination_1h | raw file name:COM_1h_3
F4	Sample source:Combination_1h | raw file name:COM_1h_4
F5	Sample source:Combination_3h | raw file name:COM_3h_1
F6	Sample source:Combination_3h | raw file name:COM_3h_2
F7	Sample source:Combination_3h | raw file name:COM_3h_3
F8	Sample source:Combination_3h | raw file name:COM_3h_4
F9	Sample source:Combination_6h | raw file name:COM_6h_1
F10	Sample source:Combination_6h | raw file name:COM_6h_2
F11	Sample source:Combination_6h | raw file name:COM_6h_3
F12	Sample source:Combination_6h | raw file name:COM_6h_4
F13	Sample source:Control_1h | raw file name:Control_1h_1
F14	Sample source:Control_1h | raw file name:Control_1h_2
F15	Sample source:Control_1h | raw file name:Control_1h_3
F16	Sample source:Control_1h | raw file name:Control_1h_4
F17	Sample source:Control_3h | raw file name:Control_3h_1
F18	Sample source:Control_3h | raw file name:Control_3h_2
F19	Sample source:Control_3h | raw file name:Control_3h_3
F20	Sample source:Control_3h | raw file name:Control_3h_4
F21	Sample source:Control_6h | raw file name:Control_6h_1
F22	Sample source:Control_6h | raw file name:Control_6h_2
F23	Sample source:Control_6h | raw file name:Control_6h_3
F24	Sample source:Control_6h | raw file name:Control_6h_4
F25	Sample source:Extraction blank | raw file name:Blank_1
F26	Sample source:Extraction blank | raw file name:Blank_2
F27	Sample source:Extraction blank | raw file name:Blank_3
F28	Sample source:Extraction blank | raw file name:Blank_4
F29	Sample source:Extraction blank | raw file name:Blank_5
F30	Sample source:Leu10-teixobactin_1h | raw file name:TX_1h_1
F31	Sample source:Leu10-teixobactin_1h | raw file name:TX_1h_2
F32	Sample source:Leu10-teixobactin_1h | raw file name:TX_1h_3
F33	Sample source:Leu10-teixobactin_1h | raw file name:TX_1h_4
F34	Sample source:Leu10-teixobactin_3h | raw file name:TX_3h_1
F35	Sample source:Leu10-teixobactin_3h | raw file name:TX_3h_2
F36	Sample source:Leu10-teixobactin_3h | raw file name:TX_3h_3
F37	Sample source:Leu10-teixobactin_3h | raw file name:TX_3h_4
F38	Sample source:Leu10-teixobactin_6h | raw file name:TX_6h_1
F39	Sample source:Leu10-teixobactin_6h | raw file name:TX_6h_2
F40	Sample source:Leu10-teixobactin_6h | raw file name:TX_6h_3
F41	Sample source:Leu10-teixobactin_6h | raw file name:TX_6h_4
F42	Sample source:Polymyxin B_1h | raw file name:PMB_1h_1
F43	Sample source:Polymyxin B_1h | raw file name:PMB_1h_2
F44	Sample source:Polymyxin B_1h | raw file name:PMB_1h_3
F45	Sample source:Polymyxin B_1h | raw file name:PMB_1h_4
F46	Sample source:Polymyxin B_3h | raw file name:PMB_3h_1
F47	Sample source:Polymyxin B_3h | raw file name:PMB_3h_2
F48	Sample source:Polymyxin B_3h | raw file name:PMB_3h_3
F49	Sample source:Polymyxin B_3h | raw file name:PMB_3h_4
F50	Sample source:Polymyxin B_6h | raw file name:PMB_6h_1
F51	Sample source:Polymyxin B_6h | raw file name:PMB_6h_2
F52	Sample source:Polymyxin B_6h | raw file name:PMB_6h_3
F53	Sample source:Polymyxin B_6h | raw file name:PMB_6h_4
F54	Sample source:Pooled QC | raw file name:QC_1
F55	Sample source:Pooled QC | raw file name:QC_2
F56	Sample source:Pooled QC | raw file name:QC_3
F57	Sample source:Pooled QC | raw file name:QC_4
F58	Sample source:Pooled QC | raw file name:QC_5

Data matrix