Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003911)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:24 \| Replicate:R1
F2	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:24 \| Replicate:R2
F3	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:24 \| Replicate:R3
F4	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:48 \| Replicate:R1
F5	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:48 \| Replicate:R2
F6	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:48 \| Replicate:R3
F7	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:6 \| Replicate:R1
F8	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:6 \| Replicate:R2
F9	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:6 \| Replicate:R3
F10	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:- \| Replicate:R1
F11	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:- \| Replicate:R2
F12	Species:Eggerthella lenta \| Media:BHI-R \| Timepoint:- \| Replicate:R3
F13	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:24 \| Replicate:R1
F14	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:24 \| Replicate:R2
F15	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:24 \| Replicate:R3
F16	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:48 \| Replicate:R1
F17	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:48 \| Replicate:R2
F18	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:48 \| Replicate:R3
F19	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:6 \| Replicate:R1
F20	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:6 \| Replicate:R2
F21	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:6 \| Replicate:R3
F22	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:- \| Replicate:R1
F23	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:- \| Replicate:R2
F24	Species:Eggerthella lenta \| Media:CHG-R \| Timepoint:- \| Replicate:R3
F25	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:24 \| Replicate:R1
F26	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:24 \| Replicate:R2
F27	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:24 \| Replicate:R3
F28	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:48 \| Replicate:R1
F29	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:48 \| Replicate:R2
F30	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:48 \| Replicate:R3
F31	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:6 \| Replicate:R1
F32	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:6 \| Replicate:R2
F33	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:6 \| Replicate:R3
F34	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:- \| Replicate:R1
F35	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:- \| Replicate:R2
F36	Species:Eggerthella lenta \| Media:Gifu-R \| Timepoint:- \| Replicate:R3
F37	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:24 \| Replicate:R1
F38	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:24 \| Replicate:R2
F39	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:24 \| Replicate:R3
F40	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:48 \| Replicate:R1
F41	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:48 \| Replicate:R2
F42	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:48 \| Replicate:R3
F43	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:6 \| Replicate:R1
F44	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:6 \| Replicate:R2
F45	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:6 \| Replicate:R3
F46	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:- \| Replicate:R1
F47	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:- \| Replicate:R2
F48	Species:Eggerthella lenta \| Media:Mega-R \| Timepoint:- \| Replicate:R3
F49	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:24 \| Replicate:R1
F50	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:24 \| Replicate:R2
F51	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:24 \| Replicate:R3
F52	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:48 \| Replicate:R1
F53	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:48 \| Replicate:R2
F54	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:48 \| Replicate:R3
F55	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:6 \| Replicate:R1
F56	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:6 \| Replicate:R2
F57	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:6 \| Replicate:R3
F58	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:- \| Replicate:R1
F59	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:- \| Replicate:R2
F60	Species:Fusobacterium nucleatum \| Media:CHG \| Timepoint:- \| Replicate:R3
F61	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:24 \| Replicate:R1
F62	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:24 \| Replicate:R2
F63	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:24 \| Replicate:R3
F64	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:48 \| Replicate:R1
F65	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:48 \| Replicate:R2
F66	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:48 \| Replicate:R3
F67	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:6 \| Replicate:R1
F68	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:6 \| Replicate:R2
F69	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:6 \| Replicate:R3
F70	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:- \| Replicate:R1
F71	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:- \| Replicate:R2
F72	Species:Fusobacterium nucleatum \| Media:Gifu \| Timepoint:- \| Replicate:R3
F73	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:24 \| Replicate:R1
F74	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:24 \| Replicate:R2
F75	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:24 \| Replicate:R3
F76	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:48 \| Replicate:R1
F77	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:48 \| Replicate:R2
F78	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:48 \| Replicate:R3
F79	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:6 \| Replicate:R1
F80	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:6 \| Replicate:R2
F81	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:6 \| Replicate:R3
F82	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:- \| Replicate:R1
F83	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:- \| Replicate:R2
F84	Species:Fusobacterium nucleatum \| Media:Mega \| Timepoint:- \| Replicate:R3
F85	Species:Unspent media \| Media:BHI-R \| Timepoint:24 \| Replicate:R1
F86	Species:Unspent media \| Media:BHI-R \| Timepoint:24 \| Replicate:R2
F87	Species:Unspent media \| Media:BHI-R \| Timepoint:24 \| Replicate:R3
F88	Species:Unspent media \| Media:BHI-R \| Timepoint:48 \| Replicate:R1
F89	Species:Unspent media \| Media:BHI-R \| Timepoint:48 \| Replicate:R2
F90	Species:Unspent media \| Media:BHI-R \| Timepoint:48 \| Replicate:R3
F91	Species:Unspent media \| Media:BHI-R \| Timepoint:6 \| Replicate:R1
F92	Species:Unspent media \| Media:BHI-R \| Timepoint:6 \| Replicate:R2
F93	Species:Unspent media \| Media:BHI-R \| Timepoint:6 \| Replicate:R3
F94	Species:Unspent media \| Media:BHI-R \| Timepoint:- \| Replicate:R1
F95	Species:Unspent media \| Media:BHI-R \| Timepoint:- \| Replicate:R2
F96	Species:Unspent media \| Media:BHI-R \| Timepoint:- \| Replicate:R3
F97	Species:Unspent media \| Media:CHG-R \| Timepoint:24 \| Replicate:R1
F98	Species:Unspent media \| Media:CHG-R \| Timepoint:24 \| Replicate:R2
F99	Species:Unspent media \| Media:CHG-R \| Timepoint:24 \| Replicate:R3
F100	Species:Unspent media \| Media:CHG-R \| Timepoint:48 \| Replicate:R1
F101	Species:Unspent media \| Media:CHG-R \| Timepoint:48 \| Replicate:R2
F102	Species:Unspent media \| Media:CHG-R \| Timepoint:48 \| Replicate:R3
F103	Species:Unspent media \| Media:CHG-R \| Timepoint:6 \| Replicate:R1
F104	Species:Unspent media \| Media:CHG-R \| Timepoint:6 \| Replicate:R2
F105	Species:Unspent media \| Media:CHG-R \| Timepoint:6 \| Replicate:R3
F106	Species:Unspent media \| Media:CHG-R \| Timepoint:- \| Replicate:R1
F107	Species:Unspent media \| Media:CHG-R \| Timepoint:- \| Replicate:R2
F108	Species:Unspent media \| Media:CHG-R \| Timepoint:- \| Replicate:R3
F109	Species:Unspent media \| Media:CHG \| Timepoint:24 \| Replicate:R1
F110	Species:Unspent media \| Media:CHG \| Timepoint:24 \| Replicate:R2
F111	Species:Unspent media \| Media:CHG \| Timepoint:24 \| Replicate:R3
F112	Species:Unspent media \| Media:CHG \| Timepoint:48 \| Replicate:R1
F113	Species:Unspent media \| Media:CHG \| Timepoint:48 \| Replicate:R2
F114	Species:Unspent media \| Media:CHG \| Timepoint:48 \| Replicate:R3
F115	Species:Unspent media \| Media:CHG \| Timepoint:6 \| Replicate:R1
F116	Species:Unspent media \| Media:CHG \| Timepoint:6 \| Replicate:R2
F117	Species:Unspent media \| Media:CHG \| Timepoint:6 \| Replicate:R3
F118	Species:Unspent media \| Media:CHG \| Timepoint:- \| Replicate:R1
F119	Species:Unspent media \| Media:CHG \| Timepoint:- \| Replicate:R2
F120	Species:Unspent media \| Media:CHG \| Timepoint:- \| Replicate:R3
F121	Species:Unspent media \| Media:Gifu-R \| Timepoint:24 \| Replicate:R1
F122	Species:Unspent media \| Media:Gifu-R \| Timepoint:24 \| Replicate:R2
F123	Species:Unspent media \| Media:Gifu-R \| Timepoint:24 \| Replicate:R3
F124	Species:Unspent media \| Media:Gifu-R \| Timepoint:48 \| Replicate:R1
F125	Species:Unspent media \| Media:Gifu-R \| Timepoint:48 \| Replicate:R2
F126	Species:Unspent media \| Media:Gifu-R \| Timepoint:48 \| Replicate:R3
F127	Species:Unspent media \| Media:Gifu-R \| Timepoint:6 \| Replicate:R1
F128	Species:Unspent media \| Media:Gifu-R \| Timepoint:6 \| Replicate:R2
F129	Species:Unspent media \| Media:Gifu-R \| Timepoint:6 \| Replicate:R3
F130	Species:Unspent media \| Media:Gifu-R \| Timepoint:- \| Replicate:R1
F131	Species:Unspent media \| Media:Gifu-R \| Timepoint:- \| Replicate:R2
F132	Species:Unspent media \| Media:Gifu-R \| Timepoint:- \| Replicate:R3
F133	Species:Unspent media \| Media:Gifu \| Timepoint:24 \| Replicate:R1
F134	Species:Unspent media \| Media:Gifu \| Timepoint:24 \| Replicate:R2
F135	Species:Unspent media \| Media:Gifu \| Timepoint:24 \| Replicate:R3
F136	Species:Unspent media \| Media:Gifu \| Timepoint:48 \| Replicate:R1
F137	Species:Unspent media \| Media:Gifu \| Timepoint:48 \| Replicate:R2
F138	Species:Unspent media \| Media:Gifu \| Timepoint:48 \| Replicate:R3
F139	Species:Unspent media \| Media:Gifu \| Timepoint:6 \| Replicate:R1
F140	Species:Unspent media \| Media:Gifu \| Timepoint:6 \| Replicate:R2
F141	Species:Unspent media \| Media:Gifu \| Timepoint:6 \| Replicate:R3
F142	Species:Unspent media \| Media:Gifu \| Timepoint:- \| Replicate:R1
F143	Species:Unspent media \| Media:Gifu \| Timepoint:- \| Replicate:R2
F144	Species:Unspent media \| Media:Gifu \| Timepoint:- \| Replicate:R3
F145	Species:Unspent media \| Media:Mega-R \| Timepoint:24 \| Replicate:R1
F146	Species:Unspent media \| Media:Mega-R \| Timepoint:24 \| Replicate:R2
F147	Species:Unspent media \| Media:Mega-R \| Timepoint:24 \| Replicate:R3
F148	Species:Unspent media \| Media:Mega-R \| Timepoint:48 \| Replicate:R1
F149	Species:Unspent media \| Media:Mega-R \| Timepoint:48 \| Replicate:R2
F150	Species:Unspent media \| Media:Mega-R \| Timepoint:48 \| Replicate:R3
F151	Species:Unspent media \| Media:Mega-R \| Timepoint:6 \| Replicate:R1
F152	Species:Unspent media \| Media:Mega-R \| Timepoint:6 \| Replicate:R2
F153	Species:Unspent media \| Media:Mega-R \| Timepoint:6 \| Replicate:R3
F154	Species:Unspent media \| Media:Mega-R \| Timepoint:- \| Replicate:R1
F155	Species:Unspent media \| Media:Mega-R \| Timepoint:- \| Replicate:R2
F156	Species:Unspent media \| Media:Mega-R \| Timepoint:- \| Replicate:R3
F157	Species:Unspent media \| Media:Mega \| Timepoint:24 \| Replicate:R1
F158	Species:Unspent media \| Media:Mega \| Timepoint:24 \| Replicate:R2
F159	Species:Unspent media \| Media:Mega \| Timepoint:24 \| Replicate:R3
F160	Species:Unspent media \| Media:Mega \| Timepoint:48 \| Replicate:R1
F161	Species:Unspent media \| Media:Mega \| Timepoint:48 \| Replicate:R2
F162	Species:Unspent media \| Media:Mega \| Timepoint:48 \| Replicate:R3
F163	Species:Unspent media \| Media:Mega \| Timepoint:6 \| Replicate:R1
F164	Species:Unspent media \| Media:Mega \| Timepoint:6 \| Replicate:R2
F165	Species:Unspent media \| Media:Mega \| Timepoint:6 \| Replicate:R3
F166	Species:Unspent media \| Media:Mega \| Timepoint:- \| Replicate:R1
F167	Species:Unspent media \| Media:Mega \| Timepoint:- \| Replicate:R2
F168	Species:Unspent media \| Media:Mega \| Timepoint:- \| Replicate:R3

Data matrix