Clustering data with heatmap algorithm for (Study ST004164)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Sample source:mouse primary astrocytes | Genotype:Ent10 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F2Sample source:mouse primary astrocytes | Genotype:Ent11 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F3Sample source:mouse primary astrocytes | Genotype:Ent12 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F4Sample source:mouse primary astrocytes | Genotype:Ent13 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F5Sample source:mouse primary astrocytes | Genotype:Ent14 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F6Sample source:mouse primary astrocytes | Genotype:Ent15 knockout | treatment:TNFš¯¯°/IL-1š¯¯°/Forodesine
F7Sample source:mouse primary astrocytes | Genotype:Ent16 knockout | treatment:TNFš¯¯°/IL-2š¯¯°/Forodesine
F8Sample source:mouse primary astrocytes | Genotype:Ent17 knockout | treatment:TNFš¯¯°/IL-3š¯¯°/Forodesine
F9Sample source:mouse primary astrocytes | Genotype:Ent18 knockout | treatment:TNFš¯¯°/IL-4š¯¯°/Forodesine
F10Sample source:mouse primary astrocytes | Genotype:Ent19 knockout | treatment:TNFš¯¯°/IL-5š¯¯°/Forodesine
F11Sample source:mouse primary astrocytes | Genotype:Ent20 knockout | treatment:TNFš¯¯°/IL-6š¯¯°/Forodesine
F12Sample source:mouse primary astrocytes | Genotype:Ent21 knockout | treatment:TNFš¯¯°/IL-7š¯¯°/Forodesine
F13Sample source:mouse primary astrocytes | Genotype:Ent2 knockout | treatment:Vehicle
F14Sample source:mouse primary astrocytes | Genotype:Ent3 knockout | treatment:Vehicle
F15Sample source:mouse primary astrocytes | Genotype:Ent4 knockout | treatment:Vehicle
F16Sample source:mouse primary astrocytes | Genotype:Ent5 knockout | treatment:Vehicle
F17Sample source:mouse primary astrocytes | Genotype:Ent6 knockout | treatment:Vehicle
F18Sample source:mouse primary astrocytes | Genotype:Ent7 knockout | treatment:Vehicle
F19Sample source:mouse primary astrocytes | Genotype:Ent8 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F20Sample source:mouse primary astrocytes | Genotype:Ent9 knockout | treatment:TNFš¯¯°/IL-1š¯¯°
F21Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-1š¯¯°
F22Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-1š¯¯°/Forodesine
F23Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-2š¯¯°/Forodesine
F24Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-3š¯¯°/Forodesine
F25Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-4š¯¯°/Forodesine
F26Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-5š¯¯°/Forodesine
F27Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-6š¯¯°/Forodesine
F28Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:TNFš¯¯°/IL-7š¯¯°/Forodesine
F29Sample source:mouse primary astrocytes | Genotype:Wild-type | treatment:Vehicle
Data matrix
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