Clustering data with heatmap algorithm for (Study ST004387)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1experimental round:exp_round_1 | treatment stage:exposure | treatment:Cantus | Sample source:gut
F2experimental round:exp_round_1 | treatment stage:exposure | treatment:ClickPro | Sample source:gut
F3experimental round:exp_round_1 | treatment stage:exposure | treatment:Control | Sample source:gut
F4experimental round:exp_round_1 | treatment stage:exposure | treatment:SIVANTOprime | Sample source:gut
F5experimental round:exp_round_1 | treatment stage:post-exposure | treatment:Cantus | Sample source:gut
F6experimental round:exp_round_1 | treatment stage:post-exposure | treatment:ClickPro | Sample source:gut
F7experimental round:exp_round_1 | treatment stage:post-exposure | treatment:Control | Sample source:gut
F8experimental round:exp_round_1 | treatment stage:post-exposure | treatment:SIVANTOprime | Sample source:gut
F9experimental round:exp_round_1 | treatment stage:pre_exposure | treatment:Cantus | Sample source:gut
F10experimental round:exp_round_1 | treatment stage:pre_exposure | treatment:ClickPro | Sample source:gut
F11experimental round:exp_round_1 | treatment stage:pre_exposure | treatment:Control | Sample source:gut
F12experimental round:exp_round_1 | treatment stage:pre_exposure | treatment:SIVANTOprime | Sample source:gut
F13experimental round:exp_round_2 | treatment stage:exposure | treatment:Cantus | Sample source:gut
F14experimental round:exp_round_2 | treatment stage:exposure | treatment:ClickPro | Sample source:gut
F15experimental round:exp_round_2 | treatment stage:exposure | treatment:Control | Sample source:gut
F16experimental round:exp_round_2 | treatment stage:exposure | treatment:SIVANTOprime | Sample source:gut
F17experimental round:exp_round_2 | treatment stage:post-exposure | treatment:Cantus | Sample source:gut
F18experimental round:exp_round_2 | treatment stage:post-exposure | treatment:ClickPro | Sample source:gut
F19experimental round:exp_round_2 | treatment stage:post-exposure | treatment:Control | Sample source:gut
F20experimental round:exp_round_2 | treatment stage:post-exposure | treatment:SIVANTOprime | Sample source:gut
F21experimental round:exp_round_2 | treatment stage:pre_exposure | treatment:Cantus | Sample source:gut
F22experimental round:exp_round_2 | treatment stage:pre_exposure | treatment:ClickPro | Sample source:gut
F23experimental round:exp_round_2 | treatment stage:pre_exposure | treatment:Control | Sample source:gut
F24experimental round:exp_round_2 | treatment stage:pre_exposure | treatment:SIVANTOprime | Sample source:gut
F25experimental round:exp_round_3 | treatment stage:exposure | treatment:Cantus | Sample source:gut
F26experimental round:exp_round_3 | treatment stage:exposure | treatment:ClickPro | Sample source:gut
F27experimental round:exp_round_3 | treatment stage:exposure | treatment:Control | Sample source:gut
F28experimental round:exp_round_3 | treatment stage:exposure | treatment:SIVANTOprime | Sample source:gut
F29experimental round:exp_round_3 | treatment stage:post-exposure | treatment:Cantus | Sample source:gut
F30experimental round:exp_round_3 | treatment stage:post-exposure | treatment:ClickPro | Sample source:gut
F31experimental round:exp_round_3 | treatment stage:post-exposure | treatment:Control | Sample source:gut
F32experimental round:exp_round_3 | treatment stage:post-exposure | treatment:SIVANTOprime | Sample source:gut
F33experimental round:exp_round_3 | treatment stage:pre_exposure | treatment:Cantus | Sample source:gut
F34experimental round:exp_round_3 | treatment stage:pre_exposure | treatment:ClickPro | Sample source:gut
F35experimental round:exp_round_3 | treatment stage:pre_exposure | treatment:Control | Sample source:gut
F36experimental round:exp_round_3 | treatment stage:pre_exposure | treatment:SIVANTOprime | Sample source:gut
Data matrix
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