Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for African Metabolomics (Study ST000011)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:AMHARA \| gender:male \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:healthy \| SUBJECT_SMOKER:N
F2	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:AMHARA \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:healthy \| SUBJECT_SMOKER:N
F3	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:ARGOBBA \| gender:female \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F4	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:ARGOBBA \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F5	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:ARGOBBA \| gender:male \| SUBJECT_FASTING:NA \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:Y
F6	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:ARGOBBA \| gender:male \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F7	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:MURSI \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F8	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:MURSI \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:Y
F9	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:MURSI \| gender:male \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F10	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:MURSI \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F11	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:SABUE \| gender:female \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F12	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:SABUE \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:healthy \| SUBJECT_SMOKER:Y
F13	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:SABUE \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:healthy \| SUBJECT_SMOKER:N
F14	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:SABUE \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:healthy \| SUBJECT_SMOKER:Y
F15	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:SABUE \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:not known \| SUBJECT_SMOKER:N
F16	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:WEYTO \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F17	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:WEYTO \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:healthy \| SUBJECT_SMOKER:N
F18	COLLECTION_COUNTRY:ETHIOPIA \| ETHNICITY_ASSIGNED:WEYTO \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F19	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:HADZABE \| gender:female \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F20	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:HADZABE \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:Y
F21	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:HADZABE \| gender:male \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:Y
F22	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:HADZABE \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F23	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:HADZABE \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:Y
F24	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:MAASAI \| gender:female \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:not known \| SUBJECT_SMOKER:N
F25	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:MAASAI \| gender:female \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F26	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:MAASAI \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F27	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:MAASAI \| gender:male \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F28	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:SANDAWE \| gender:female \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F29	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:SANDAWE \| gender:female \| SUBJECT_FASTING:Y \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N
F30	COLLECTION_COUNTRY:TANZANIA \| ETHNICITY_ASSIGNED:SANDAWE \| gender:male \| SUBJECT_FASTING:N \| SUBJECT_ILLNESS:sick \| SUBJECT_SMOKER:N

Data matrix