Clustering data with heatmap algorithm for Murine gastrointestinal bile acid profiles before and after antibiotics (Study ST000196)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Recovery:five week recovery | Gender:female | Treatment:Cefoperazone treated
F2Recovery:five week recovery | Gender:male | Treatment:Cefoperazone treated
F3Recovery:four week recovery | Gender:female | Treatment:Cefoperazone treated
F4Recovery:four week recovery | Gender:male | Treatment:Cefoperazone treated
F5Recovery:na | Gender:female | Treatment:No antibiotics
F6Recovery:na | Gender:male | Treatment:No antibiotics
F7Recovery:no recovery | Gender:female | Treatment:Cefoperazone treated
F8Recovery:no recovery | Gender:female | Treatment:IP clindamycin
F9Recovery:no recovery | Gender:female | Treatment:Kanamycin treated
F10Recovery:no recovery | Gender:female | Treatment:Metronidazole treated
F11Recovery:no recovery | Gender:female | Treatment:Vancomycin treated
F12Recovery:no recovery | Gender:male | Treatment:Cefoperazone treated
F13Recovery:no recovery | Gender:male | Treatment:IP clindamycin
F14Recovery:no recovery | Gender:male | Treatment:Kanamycin treated
F15Recovery:no recovery | Gender:male | Treatment:Metronidazole treated
F16Recovery:no recovery | Gender:male | Treatment:Vancomycin treated
F17Recovery:one week recovery | Gender:female | Treatment:Cefoperazone treated
F18Recovery:one week recovery | Gender:male | Treatment:Cefoperazone treated
F19Recovery:six week recovery | Gender:female | Treatment:Cefoperazone treated
F20Recovery:six week recovery | Gender:female | Treatment:Cefoperazone treated IP clindamycin
F21Recovery:six week recovery | Gender:male | Treatment:Cefoperazone treated
F22Recovery:six week recovery | Gender:male | Treatment:Cefoperazone treated IP clindamycin
F23Recovery:three week recovery | Gender:female | Treatment:Cefoperazone treated
F24Recovery:three week recovery | Gender:male | Treatment:Cefoperazone treated
F25Recovery:two week recovery | Gender:female | Treatment:Cefoperazone treated
F26Recovery:two week recovery | Gender:male | Treatment:Cefoperazone treated
Data matrix
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