Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for Study 2 Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer (test/validation) (Study ST000386)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Organ:Plasma \| Cancer status:Adenocarcinoma \| Smoker:Current \| Gender:F
F2	Organ:Plasma \| Cancer status:Adenocarcinoma \| Smoker:Current \| Gender:M
F3	Organ:Plasma \| Cancer status:Adenocarcinoma \| Smoker:Former \| Gender:F
F4	Organ:Plasma \| Cancer status:Adenocarcinoma \| Smoker:Former \| Gender:M
F5	Organ:Plasma \| Cancer status:Adenocarcnoma \| Smoker:Former \| Gender:F
F6	Organ:Plasma \| Cancer status:Adenosquamous \| Smoker:Current \| Gender:F
F7	Organ:Plasma \| Cancer status:Adenosquamous \| Smoker:Current \| Gender:M
F8	Organ:Plasma \| Cancer status:Adenosquamous \| Smoker:Former \| Gender:M
F9	Organ:Plasma \| Cancer status:Healthy \| Smoker:Current \| Gender:F
F10	Organ:Plasma \| Cancer status:Healthy \| Smoker:Current \| Gender:M
F11	Organ:Plasma \| Cancer status:Healthy \| Smoker:Former \| Gender:F
F12	Organ:Plasma \| Cancer status:Healthy \| Smoker:Former \| Gender:M
F13	Organ:Plasma \| Cancer status:NA \| Smoker:NA \| Gender:NA
F14	Organ:Serum \| Cancer status:Adenocarcinoma \| Smoker:Current \| Gender:F
F15	Organ:Serum \| Cancer status:Adenocarcinoma \| Smoker:Current \| Gender:M
F16	Organ:Serum \| Cancer status:Adenocarcinoma \| Smoker:Former \| Gender:F
F17	Organ:Serum \| Cancer status:Adenocarcinoma \| Smoker:Former \| Gender:M
F18	Organ:Serum \| Cancer status:Adenocarcnoma \| Smoker:Former \| Gender:F
F19	Organ:Serum \| Cancer status:Adenocarcnoma \| Smoker:Former \| Gender:M
F20	Organ:Serum \| Cancer status:Adenosquamous \| Smoker:Current \| Gender:F
F21	Organ:Serum \| Cancer status:Adenosquamous \| Smoker:Current \| Gender:M
F22	Organ:Serum \| Cancer status:Adenosquamous \| Smoker:Former \| Gender:M
F23	Organ:Serum \| Cancer status:Healthy \| Smoker:Current \| Gender:F
F24	Organ:Serum \| Cancer status:Healthy \| Smoker:Current \| Gender:M
F25	Organ:Serum \| Cancer status:Healthy \| Smoker:Former \| Gender:F
F26	Organ:Serum \| Cancer status:Healthy \| Smoker:Former \| Gender:M

Data matrix