Clustering data with heatmap algorithm for Murine bile acid profiles during CDI R20291 infection (Study ST000735)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1SEX:F | TIMEPOINT:Day 0 | TREATMENT:no treatment
F2SEX:F | TIMEPOINT:Day 0 | TREATMENT:UDCA
F3SEX:F | TIMEPOINT:Day 0 | TREATMENT:vehicle
F4SEX:F | TIMEPOINT:Day 2 | TREATMENT:no treatment
F5SEX:F | TIMEPOINT:Day 2 | TREATMENT:UDCA
F6SEX:F | TIMEPOINT:Day 2 | TREATMENT:vehicle
F7SEX:F | TIMEPOINT:Day 4 | TREATMENT:no treatment
F8SEX:F | TIMEPOINT:Day 4 | TREATMENT:UDCA
F9SEX:F | TIMEPOINT:Day 4 | TREATMENT:vehicle
F10SEX:F | TIMEPOINT:Day 7 | TREATMENT:no treatment
F11SEX:F | TIMEPOINT:Day 7 | TREATMENT:UDCA
F12SEX:F | TIMEPOINT:Day 7 | TREATMENT:vehicle
F13SEX:F | TIMEPOINT:NA | TREATMENT:post antibiotics
F14SEX:F | TIMEPOINT:NA | TREATMENT:pre antibiotics
F15SEX:M | TIMEPOINT:Day 0 | TREATMENT:UDCA
F16SEX:M | TIMEPOINT:Day 0 | TREATMENT:vehicle
F17SEX:M | TIMEPOINT:Day 2 | TREATMENT:no treatment
F18SEX:M | TIMEPOINT:Day 2 | TREATMENT:UDCA
F19SEX:M | TIMEPOINT:Day 2 | TREATMENT:vehicle
F20SEX:M | TIMEPOINT:Day 4 | TREATMENT:no treatment
F21SEX:M | TIMEPOINT:Day 4 | TREATMENT:UDCA
F22SEX:M | TIMEPOINT:Day 4 | TREATMENT:vehicle
F23SEX:M | TIMEPOINT:Day 7 | TREATMENT:no treatment
F24SEX:M | TIMEPOINT:Day 7 | TREATMENT:UDCA
F25SEX:M | TIMEPOINT:Day 7 | TREATMENT:vehicle
F26SEX:M | TIMEPOINT:NA | TREATMENT:post antibiotics
F27SEX:M | TIMEPOINT:NA | TREATMENT:pre antibiotics
F28SEX:NA | TIMEPOINT:Day 0 | TREATMENT:day0 no challenge
F29SEX:NA | TIMEPOINT:Day 14 | TREATMENT:day14 post challenge
F30SEX:NA | TIMEPOINT:Day 2 | TREATMENT:day2 post challenge
F31SEX:NA | TIMEPOINT:Day 4 | TREATMENT:day4 post challenge
F32SEX:NA | TIMEPOINT:Day 7 | TREATMENT:day7 no challenge
F33SEX:NA | TIMEPOINT:Day 7 | TREATMENT:day7 post challenge
Data matrix
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